Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017169A_C01 KMC017169A_c01
(499 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_127410.1| NADH-dependent DYHYDROGENASE RELATED PROTEIN [P... 35 0.61
gb|AAN09796.1| benzoyl coenzyme A: benzyl alcohol benzoyl transf... 33 1.4
ref|NP_614454.1| Predicted membrane-bound metal-dependent hydrol... 33 2.3
sp|Q08050|FXM1_HUMAN Forkhead box protein M1 (Forkhead-related p... 32 3.0
ref|NP_068772.1| forkhead box M1; trident; forkhead (Drosophila)... 32 3.0
>ref|NP_127410.1| NADH-dependent DYHYDROGENASE RELATED PROTEIN [Pyrococcus abyssi]
gi|7520732|pir||A75025 NADH-dependent dyhydrogenase
related protein PAB1138 - Pyrococcus abyssi (strain
Orsay) gi|5459153|emb|CAB50639.1| NADH dependent
dyhydrogenase related protein [Pyrococcus abyssi]
Length = 341
Score = 34.7 bits (78), Expect = 0.61
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 10/72 (13%)
Frame = +2
Query: 296 WIFGFPPKMGVICKRVKQLARFGGFR--------VSKVQSSFERPICNPLSASSPSV--S 445
W + PPK GV + + + G R V V+SSFE P +P+ ++ P +
Sbjct: 235 WSYPMPPKYGVFYHHLDIIGKNGRIRYTPMDTPVVGVVKSSFEMPRFSPMLSTFPQAFEA 294
Query: 446 GTRHISELVKSN 481
RH E +KS+
Sbjct: 295 ELRHFFECIKSS 306
>gb|AAN09796.1| benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Clarkia
breweri]
Length = 456
Score = 33.5 bits (75), Expect = 1.4
Identities = 30/94 (31%), Positives = 42/94 (43%), Gaps = 13/94 (13%)
Frame = -3
Query: 335 CKSRPFLGETQKST-HNFQALNSNRDAETFAA--------KSNYPSNEERNPEIYIRAEK 183
C+ +P L K T H F+ L+ D E K N S +ER+P IR
Sbjct: 12 CRRKPELIRPAKQTPHEFKKLSDVEDQEGLRFQIPVIQFYKHNNESMQERDPVQVIREGI 71
Query: 182 ARWEV*N----GRLSKLESRKLDAKCCGFSCVFL 93
AR V GRL +++ RKL +C G +F+
Sbjct: 72 ARALVYYYPFAGRLREVDGRKLVVECTGEGVMFI 105
>ref|NP_614454.1| Predicted membrane-bound metal-dependent hydrolase [Methanopyrus
kandleri AV19] gi|19887753|gb|AAM02384.1| Predicted
membrane-bound metal-dependent hydrolase [Methanopyrus
kandleri AV19]
Length = 223
Score = 32.7 bits (73), Expect = 2.3
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 215 RNPEIYIRAEKARWEV*NGRLSKLESRKLDAKCCGFSCVFLCFLLVNDPSKF 60
R + +R + RW V N RL+ + S K DA + + LC +++ PS+F
Sbjct: 119 RGVPLLVRRDGGRWRVWNLRLTPVPSDKWDAVLPPATVLLLCLVILACPSEF 170
>sp|Q08050|FXM1_HUMAN Forkhead box protein M1 (Forkhead-related protein FKHL16)
(Hepatocyte nuclear factor 3 forkhead homolog 11)
(HNF-3/fork-head homolog-11) (HFH-11) (Winged helix
factor from INS-1 cells) (M-phase phosphoprotein 2)
(MPM-2 reactive phosphoprotein 2) (Transcription factor
Trident) gi|15277519|gb|AAH12863.1|AAH12863 forkhead box
M1 [Homo sapiens]
Length = 763
Score = 32.3 bits (72), Expect = 3.0
Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 5/90 (5%)
Frame = -2
Query: 399 SNDDCTFETLKPPNLANCFTRLQ--ITPIFGGNPKIHTQFSGSEFKSR---RRNLRSKVK 235
+N +F T+ P AN + L P+ G+P++ + + RRN+ K +
Sbjct: 301 ANGKVSFWTIHPS--ANRYLTLDQVFKPLDPGSPQLPEHLESQQKRPNPELRRNMTIKTE 358
Query: 234 LPLERRTKSRDLYSRGKGTLGSVKWPVIQT 145
LPL R K + L R L +++PV Q+
Sbjct: 359 LPLGARRKMKPLLPRVSSYLVPIQFPVNQS 388
>ref|NP_068772.1| forkhead box M1; trident; forkhead (Drosophila)-like 16; Forkhead,
drosophila, homolog-like 16 [Homo sapiens]
gi|1778838|gb|AAC63595.1| INS-1 winged-helix homolog
[Homo sapiens]
Length = 763
Score = 32.3 bits (72), Expect = 3.0
Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 5/90 (5%)
Frame = -2
Query: 399 SNDDCTFETLKPPNLANCFTRLQ--ITPIFGGNPKIHTQFSGSEFKSR---RRNLRSKVK 235
+N +F T+ P AN + L P+ G+P++ + + RRN+ K +
Sbjct: 301 ANGKVSFWTIHPS--ANRYLTLDQVFKPLDPGSPQLPEHLESQQKRPNPELRRNMTIKTE 358
Query: 234 LPLERRTKSRDLYSRGKGTLGSVKWPVIQT 145
LPL R K + L R L +++PV Q+
Sbjct: 359 LPLGARRKMKPLLPRVSSYLVPIQFPVNQS 388
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,621,236
Number of Sequences: 1393205
Number of extensions: 9738145
Number of successful extensions: 24600
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24597
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
