Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017157A_C01 KMC017157A_c01
(441 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_729188.1| CG32394-PA [Drosophila melanogaster] gi|2309405... 36 0.12
gb|AAL28252.1| GH14591p [Drosophila melanogaster] 36 0.12
ref|NP_002607.1| period 1; period (Drosophila) homolog 1; hPER; ... 34 0.47
gb|AAH28207.1| Similar to period homolog 1 (Drosophila) [Homo sa... 34 0.47
gb|AAG01149.1|AF284444_1 PER1 [Homo sapiens] 33 0.61
>ref|NP_729188.1| CG32394-PA [Drosophila melanogaster] gi|23094059|gb|AAN12081.1|
CG32394-PA [Drosophila melanogaster]
Length = 2465
Score = 35.8 bits (81), Expect = 0.12
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Frame = -1
Query: 405 PPSHRLRGKPSKSHAKSNHLNFPS--HDHHL*HKVEEKSQQQPHTETQTTNNNSMLCEIL 232
PP+ + + S + SN +N PS H HHL + +P T +N ++ +L
Sbjct: 2014 PPAAQSTVAAAVSESSSNMMNLPSTAHQHHLSQTHHLAAYNKPTPPPPQTYSNPLMQSML 2073
Query: 231 GCFKYSILFSDHNYPPPPPARNAAAIVASVRGRL------RYSPSDHHPS 100
G Y+ + D PP +A++ AS G Y P +++P+
Sbjct: 2074 G---YAGNYFDKTMPPAAHMYSASSSAASAYGNPAQQLPGNYVPGNNNPA 2120
>gb|AAL28252.1| GH14591p [Drosophila melanogaster]
Length = 572
Score = 35.8 bits (81), Expect = 0.12
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Frame = -1
Query: 405 PPSHRLRGKPSKSHAKSNHLNFPS--HDHHL*HKVEEKSQQQPHTETQTTNNNSMLCEIL 232
PP+ + + S + SN +N PS H HHL + +P T +N ++ +L
Sbjct: 121 PPAAQSTVAAAVSESSSNMMNLPSTAHQHHLSQTHHLAAYNKPTPPPPQTYSNPLMQSML 180
Query: 231 GCFKYSILFSDHNYPPPPPARNAAAIVASVRGRL------RYSPSDHHPS 100
G Y+ + D PP +A++ AS G Y P +++P+
Sbjct: 181 G---YAGNYFDKTMPPAAHMYSASSSAASAYGNPAQQLPGNYVPGNNNPA 227
>ref|NP_002607.1| period 1; period (Drosophila) homolog 1; hPER; Period, drosophila,
homolog of; circadian pacemaker protein RIGUI [Homo
sapiens] gi|6093672|sp|O15534|PER1_HUMAN Period
circadian protein 1 (Circadian pacemaker protein Rigui)
(hPER) gi|7513239|pir||T00018 period protein homolog -
human gi|2435507|gb|AAC51765.1| Rigui [Homo sapiens]
gi|2506045|dbj|BAA22633.1| hPer [Homo sapiens]
gi|6537134|gb|AAF15544.1| PER1 [Homo sapiens]
gi|7416848|dbj|BAA94085.1| period1 [Homo sapiens]
gi|21954546|dbj|BAC06326.1| KIAA0482 protein [Homo
sapiens]
Length = 1290
Score = 33.9 bits (76), Expect = 0.47
Identities = 31/123 (25%), Positives = 47/123 (38%)
Frame = -1
Query: 414 SSDPPSHRLRGKPSKSHAKSNHLNFPSHDHHL*HKVEEKSQQQPHTETQTTNNNSMLCEI 235
S PP HR PS + + N S + H+ SQ+ H+ + +S L E
Sbjct: 27 SPGPPQHRPCPGPSLADDTDANSNGSSGNESNGHESRGASQRSSHSSSSGNGKDSALLET 86
Query: 234 LGCFKYSILFSDHNYPPPPPARNAAAIVASVRGRLRYSPSDHHPSSTYAKARHSTDLQIA 55
K S ++ P PP+ + A + S + S A+AR +L A
Sbjct: 87 TESSK-----STNSQSPSPPSSSIAYSLLSASSEQDNPSTSGCSSEQSARARTQKELMTA 141
Query: 54 NRE 46
RE
Sbjct: 142 LRE 144
>gb|AAH28207.1| Similar to period homolog 1 (Drosophila) [Homo sapiens]
Length = 572
Score = 33.9 bits (76), Expect = 0.47
Identities = 31/123 (25%), Positives = 47/123 (38%)
Frame = -1
Query: 414 SSDPPSHRLRGKPSKSHAKSNHLNFPSHDHHL*HKVEEKSQQQPHTETQTTNNNSMLCEI 235
S PP HR PS + + N S + H+ SQ+ H+ + +S L E
Sbjct: 27 SPGPPQHRPCPGPSLADDTDANSNGSSGNESNGHESRGASQRSSHSSSSGNGKDSALLET 86
Query: 234 LGCFKYSILFSDHNYPPPPPARNAAAIVASVRGRLRYSPSDHHPSSTYAKARHSTDLQIA 55
K S ++ P PP+ + A + S + S A+AR +L A
Sbjct: 87 TESSK-----STNSQSPSPPSSSIAYSLLSASSEQDNPSTSGCSSEQSARARTQKELMTA 141
Query: 54 NRE 46
RE
Sbjct: 142 LRE 144
>gb|AAG01149.1|AF284444_1 PER1 [Homo sapiens]
Length = 144
Score = 33.5 bits (75), Expect = 0.61
Identities = 31/123 (25%), Positives = 47/123 (38%)
Frame = -1
Query: 414 SSDPPSHRLRGKPSKSHAKSNHLNFPSHDHHL*HKVEEKSQQQPHTETQTTNNNSMLCEI 235
S PP HR PS + + N S + H+ SQ+ H+ + +S L E
Sbjct: 27 SLGPPQHRPCPGPSLADDTDANSNGSSGNESNGHESRGASQRSSHSSSSGNGKDSALLET 86
Query: 234 LGCFKYSILFSDHNYPPPPPARNAAAIVASVRGRLRYSPSDHHPSSTYAKARHSTDLQIA 55
K S ++ P PP+ + A + S + S A+AR +L A
Sbjct: 87 TESSK-----STNSQSPSPPSSSIAYSLLSASSEQDNPSTSGCSSEQSARARTQKELMTA 141
Query: 54 NRE 46
RE
Sbjct: 142 LRE 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,806,353
Number of Sequences: 1393205
Number of extensions: 9639959
Number of successful extensions: 38567
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 33605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38037
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
