Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017155A_C01 KMC017155A_c01
(380 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC05810.1| seven transmembrane helix receptor [Homo sapiens] 34 0.52
ref|XP_212167.1| hypothetical protein XP_212167 [Homo sapiens] 30 5.7
ref|NP_504861.1| Predicted CDS, putative plasma membrane membran... 30 9.7
ref|NP_200395.1| putative protein; protein id: At5g55840.1 [Arab... 30 9.7
ref|XP_147303.1| hypothetical protein XP_147303 [Mus musculus] 30 9.7
>dbj|BAC05810.1| seven transmembrane helix receptor [Homo sapiens]
Length = 346
Score = 33.9 bits (76), Expect = 0.52
Identities = 12/39 (30%), Positives = 25/39 (63%)
Frame = -2
Query: 169 LCDCVTIKKESIMMTNFCQVCVAIDNYCMPLCISMCILL 53
LCDCV+ S+ + + VC+ + + C+ +C+S+C+ +
Sbjct: 4 LCDCVSCVSVSVCLYLYVCVCICV-SVCVCICVSVCVCI 41
>ref|XP_212167.1| hypothetical protein XP_212167 [Homo sapiens]
Length = 168
Score = 30.4 bits (67), Expect = 5.7
Identities = 17/59 (28%), Positives = 29/59 (48%), Gaps = 8/59 (13%)
Frame = -2
Query: 193 LCSMAP*WLCDCVTIKKESIMMTNFCQ-----VCVAIDNY---CMPLCISMCILLYFLH 41
+C+ P LC V K+ MM + C +CV + Y C +C+S+C+ + +H
Sbjct: 89 VCAGGP-LLCSFVGAKQRMCMMLSMCACVYVCMCVCVRMYMYVCACVCVSLCVYVVCVH 146
>ref|NP_504861.1| Predicted CDS, putative plasma membrane membrane protein family
member, with at least 5 transmembrane domains, nematode
specific [Caenorhabditis elegans] gi|7498572|pir||T03883
hypothetical protein F07G11.8 - Caenorhabditis elegans
gi|10864340|gb|AAG24053.1| Hypothetical protein F07G11.8
[Caenorhabditis elegans]
Length = 293
Score = 29.6 bits (65), Expect = 9.7
Identities = 15/54 (27%), Positives = 29/54 (52%)
Frame = -3
Query: 204 LNIYYAVWHLNGYVIVLL*KKKVL**PIFVKSVLQLIIIACLFAFPCVSYCISY 43
L++++ H+NG+V++ L K + F +++ II+ L +F CI Y
Sbjct: 82 LSVFFGWIHMNGFVVITLNKNNIF---TFQRTIFIFIILITLTSFSAA--CIQY 130
>ref|NP_200395.1| putative protein; protein id: At5g55840.1 [Arabidopsis thaliana]
gi|8843735|dbj|BAA97283.1| contains similarity to
salt-inducible protein~gene_id:MWJ3.2 [Arabidopsis
thaliana]
Length = 1274
Score = 29.6 bits (65), Expect = 9.7
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 5 IPEALTFKTCLVM*EIQ*DTHGNAKRHAIIINCNTDLTKIGHHNTFFFYSNTI 163
+P ++F CL+ + +GN+ + ++TK+GHH TFF Y + +
Sbjct: 540 LPNTVSFD-CLI------NGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLL 585
>ref|XP_147303.1| hypothetical protein XP_147303 [Mus musculus]
Length = 127
Score = 29.6 bits (65), Expect = 9.7
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = -2
Query: 172 WLCDCVTIKKESIMMTNFCQVCVAIDNYCMPLCISMCILLYFL 44
W CDC+T+ + C+VCV C+ LC MC+ ++ L
Sbjct: 74 WFCDCLTVS------SVLCRVCV-----CVSLC--MCLKIHTL 103
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 306,211,321
Number of Sequences: 1393205
Number of extensions: 5682242
Number of successful extensions: 9919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9892
length of database: 448,689,247
effective HSP length: 102
effective length of database: 306,582,337
effective search space used: 7357976088
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
