Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017126A_C01 KMC017126A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176500.1| membrane protein, putative; protein id: At1g631... 100 1e-20
ref|NP_172735.1| membrane protein, putative; protein id: At1g127... 93 2e-18
pir||G86260 protein T12C24.28 [imported] - Arabidopsis thaliana ... 93 2e-18
ref|NP_196342.1| membrane protein; protein id: At5g07250.1, supp... 90 2e-17
pir||T45918 hypothetical protein F5K20.80 - Arabidopsis thaliana... 89 2e-17
>ref|NP_176500.1| membrane protein, putative; protein id: At1g63120.1 [Arabidopsis
thaliana] gi|25404407|pir||F96656 probable membrane
protein F16M19.4 [imported] - Arabidopsis thaliana
gi|12323258|gb|AAG51610.1|AC010795_14 membrane protein,
putative; 61952-60281 [Arabidopsis thaliana]
gi|28393358|gb|AAO42103.1| putative membrane protein
[Arabidopsis thaliana] gi|28827620|gb|AAO50654.1|
putative membrane protein [Arabidopsis thaliana]
Length = 317
Score = 100 bits (249), Expect = 1e-20
Identities = 48/88 (54%), Positives = 59/88 (66%)
Frame = +2
Query: 146 ENNNNNNTYSAPPASAYVYNPETHWTSWLVPLFVVANIAVFVVTMYINNCHKHNLGFQGD 325
+N NN Y +S ETHWTSWL+P VVAN+AVF+ M++N+C K G +
Sbjct: 12 KNRGANNNYFYEESSG-----ETHWTSWLIPAIVVANLAVFIAVMFVNDCPKKITGPNKE 66
Query: 326 CIAGFLGRFSFQPLQENPLLGPSSSA*E 409
C+A FLGRFSFQPL+ENPL GPSSS E
Sbjct: 67 CVARFLGRFSFQPLKENPLFGPSSSTLE 94
>ref|NP_172735.1| membrane protein, putative; protein id: At1g12750.1, supported by
cDNA: gi_17529033 [Arabidopsis thaliana]
gi|17529034|gb|AAL38727.1| putative membrane protein
[Arabidopsis thaliana] gi|20259083|gb|AAM14257.1|
putative membrane protein [Arabidopsis thaliana]
Length = 307
Score = 92.8 bits (229), Expect = 2e-18
Identities = 42/74 (56%), Positives = 52/74 (69%), Gaps = 4/74 (5%)
Frame = +2
Query: 209 ETHWTSWLVPLFVVANIAVFVVTMYINNCHKHNLGFQGDCIAGFLGRFSFQPLQENPLLG 388
+T WT+WL P VVAN+++F+V MY N+C K G GDC+A L RFSFQPL+ENP LG
Sbjct: 15 DTQWTAWLTPTIVVANVSIFIVVMYTNDCPKTTTGANGDCVAKLLRRFSFQPLRENPFLG 74
Query: 389 PSSSA*E----LNW 418
PSSS E L+W
Sbjct: 75 PSSSTLEKLGALDW 88
>pir||G86260 protein T12C24.28 [imported] - Arabidopsis thaliana
gi|9502383|gb|AAF88090.1|AC025417_18 T12C24.28
[Arabidopsis thaliana]
Length = 302
Score = 92.8 bits (229), Expect = 2e-18
Identities = 42/74 (56%), Positives = 52/74 (69%), Gaps = 4/74 (5%)
Frame = +2
Query: 209 ETHWTSWLVPLFVVANIAVFVVTMYINNCHKHNLGFQGDCIAGFLGRFSFQPLQENPLLG 388
+T WT+WL P VVAN+++F+V MY N+C K G GDC+A L RFSFQPL+ENP LG
Sbjct: 10 DTQWTAWLTPTIVVANVSIFIVVMYTNDCPKTTTGANGDCVAKLLRRFSFQPLRENPFLG 69
Query: 389 PSSSA*E----LNW 418
PSSS E L+W
Sbjct: 70 PSSSTLEKLGALDW 83
>ref|NP_196342.1| membrane protein; protein id: At5g07250.1, supported by cDNA:
gi_16648761, supported by cDNA: gi_20466142 [Arabidopsis
thaliana] gi|11358506|pir||T48496 membrane protein -
Arabidopsis thaliana gi|7546703|emb|CAB87281.1| membrane
protein [Arabidopsis thaliana]
gi|16648762|gb|AAL25572.1| AT5g07250/T28J14_190
[Arabidopsis thaliana] gi|20466143|gb|AAM19993.1|
AT5g07250/T28J14_190 [Arabidopsis thaliana]
Length = 346
Score = 89.7 bits (221), Expect = 2e-17
Identities = 40/64 (62%), Positives = 50/64 (77%), Gaps = 2/64 (3%)
Frame = +2
Query: 212 THWTSWLVPLFVVANIAVFVVTMYINNCHKH--NLGFQGDCIAGFLGRFSFQPLQENPLL 385
+ WTSWLVP+FVVAN+AVFVV M++NNC H + +G C+A FLGR SF+PL+ NPL
Sbjct: 51 SRWTSWLVPMFVVANVAVFVVAMFVNNCPNHFESHRLRGHCVAKFLGRLSFEPLRTNPLF 110
Query: 386 GPSS 397
GPSS
Sbjct: 111 GPSS 114
>pir||T45918 hypothetical protein F5K20.80 - Arabidopsis thaliana
gi|7629998|emb|CAB88340.1| putative protein [Arabidopsis
thaliana]
Length = 361
Score = 89.4 bits (220), Expect = 2e-17
Identities = 41/60 (68%), Positives = 47/60 (78%)
Frame = +2
Query: 218 WTSWLVPLFVVANIAVFVVTMYINNCHKHNLGFQGDCIAGFLGRFSFQPLQENPLLGPSS 397
W WL+P FVVAN+AVFV+TMY+NNC K + GDC A FLGRFSFQ +ENPLLGPSS
Sbjct: 36 WFPWLIPCFVVANVAVFVITMYVNNCPKKS----GDCFADFLGRFSFQNTRENPLLGPSS 91
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,935,814
Number of Sequences: 1393205
Number of extensions: 10622886
Number of successful extensions: 160250
Number of sequences better than 10.0: 258
Number of HSP's better than 10.0 without gapping: 54897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121323
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
