Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017122A_C01 KMC017122A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195462.1| putative protein; protein id: At4g37460.1 [Arab... 147 1e-34
dbj|BAC16165.1| hypothetical protein~similar to Arabidopsis thal... 132 3e-30
gb|AAO51695.1| similar to Oryza sativa (japonica cultivar-group)... 86 2e-16
ref|NP_663582.1| similar to hypothetical protein FLJ22584 [Mus m... 69 3e-11
dbj|BAC11586.1| unnamed protein product [Homo sapiens] 69 3e-11
>ref|NP_195462.1| putative protein; protein id: At4g37460.1 [Arabidopsis thaliana]
gi|7486501|pir||T04740 hypothetical protein F6G17.110 -
Arabidopsis thaliana gi|4468812|emb|CAB38213.1| putative
protein [Arabidopsis thaliana] gi|7270728|emb|CAB80411.1|
putative protein [Arabidopsis thaliana]
Length = 1013
Score = 147 bits (370), Expect = 1e-34
Identities = 71/110 (64%), Positives = 89/110 (80%)
Frame = -3
Query: 549 LEDVRNAILRMTYYWYNFRPLYKGSAAVGFVVMQGLLLAAHMEFTGSIPQGLQVDLEAIL 370
LE VR+AILRMTYYWYNF PL +G+A GFVV+ GLLLAA+MEFT +IP+GLQ+D EAIL
Sbjct: 904 LETVRDAILRMTYYWYNFMPLARGTAVTGFVVLLGLLLAANMEFTETIPKGLQIDWEAIL 963
Query: 369 SSDTNSFVDSVETWLYPSLKLTTLWKGYPDIVSTFETIGSVVAALSFSDD 220
+ + SFVDSV++WLYPSLK+ T W+ + +I S F T G+VVAALS +D
Sbjct: 964 NVEPGSFVDSVKSWLYPSLKINTSWRDHTEISSAFSTTGAVVAALSTYND 1013
>dbj|BAC16165.1| hypothetical protein~similar to Arabidopsis thaliana chromosome4,
At4g37460 [Oryza sativa (japonica cultivar-group)]
gi|24414057|dbj|BAC22306.1| hypothetical protein~similar
to Arabidopsis thaliana chromosome4, At4g37460 [Oryza
sativa (japonica cultivar-group)]
Length = 1022
Score = 132 bits (332), Expect = 3e-30
Identities = 65/109 (59%), Positives = 81/109 (73%)
Frame = -3
Query: 549 LEDVRNAILRMTYYWYNFRPLYKGSAAVGFVVMQGLLLAAHMEFTGSIPQGLQVDLEAIL 370
L+ V+ AILRMTYYWYNF PL +GSA VG+VV+ GL LAA+M+ T SIP G+QVD EAIL
Sbjct: 913 LDAVKAAILRMTYYWYNFMPLSRGSAVVGYVVLLGLFLAANMDVTASIPHGVQVDWEAIL 972
Query: 369 SSDTNSFVDSVETWLYPSLKLTTLWKGYPDIVSTFETIGSVVAALSFSD 223
S D ++FVD ++ WLYPS+K + K Y D+ F T GSVVAAL+ D
Sbjct: 973 SQDPDTFVDKIKPWLYPSIKTSRNLKDYADVSVAFSTTGSVVAALTCVD 1021
>gb|AAO51695.1| similar to Oryza sativa (japonica cultivar-group). OJ1513_F02.22
protein [Dictyostelium discoideum]
Length = 1050
Score = 86.3 bits (212), Expect = 2e-16
Identities = 45/116 (38%), Positives = 70/116 (59%), Gaps = 5/116 (4%)
Frame = -3
Query: 549 LEDVRNAILRMTYYWYNFRPLYKGSAAVGFVVMQGLLLAAHMEFTGSIPQGLQVDLEAIL 370
L+++ + IL +++YWYNF PL +GSAA+GF + GL L+ + T SIP+ Q D EAIL
Sbjct: 941 LDEISDLILCLSFYWYNFMPLSRGSAALGFTTLLGLFLSLDIAITSSIPKNQQPDWEAIL 1000
Query: 369 SSDTNSFVDSVETWLYP-----SLKLTTLWKGYPDIVSTFETIGSVVAALSFSDDF 217
T SF+ ++ WLYP +L+ T+L + S F TI ++ L+ S+ +
Sbjct: 1001 RPTTTSFISVIKPWLYPARSKFNLQTTSL------VSSQFNTIKKMIQVLNNSNQY 1050
>ref|NP_663582.1| similar to hypothetical protein FLJ22584 [Mus musculus]
gi|17028450|gb|AAH17545.1| Similar to hypothetical
protein FLJ22584 [Mus musculus]
Length = 307
Score = 69.3 bits (168), Expect = 3e-11
Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Frame = -3
Query: 540 VRNAILRMTYYWYNFRPLYKGSAAVGFVVMQGLLLAAHMEFTGSIPQGLQVDLEAILSSD 361
V N IL + YY+YN PL +GS+ + + V+ G L+A+ E G IP+G VD EA+ +
Sbjct: 195 VCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPG 254
Query: 360 TNSFVDSVETWLYPSLK-LTTLWKGYPDIVSTFETIGSVVAALS 232
+ +F ++W+ +LK ++ +K P + TF T+ S++ L+
Sbjct: 255 SEAFSKIAKSWM--NLKSISPSYKTLPSVSETFPTLRSMIEVLN 296
>dbj|BAC11586.1| unnamed protein product [Homo sapiens]
Length = 860
Score = 69.3 bits (168), Expect = 3e-11
Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Frame = -3
Query: 540 VRNAILRMTYYWYNFRPLYKGSAAVGFVVMQGLLLAAHMEFTGSIPQGLQVDLEAILSSD 361
V N IL + YY+YN PL +GS+ + + V+ G L+A+ E G IP+G VD EA+ +
Sbjct: 748 VCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPG 807
Query: 360 TNSFVDSVETWLYPSLK-LTTLWKGYPDIVSTFETIGSVVAALS 232
+ +F ++W+ +LK ++ +K P + TF T+ S++ L+
Sbjct: 808 SEAFSKVAKSWM--NLKSISPSYKTLPSVSETFPTLRSMIEVLN 849
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,790,690
Number of Sequences: 1393205
Number of extensions: 9294617
Number of successful extensions: 25082
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25078
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
