Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017120A_C01 KMC017120A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA31060.1| hypothetical protein [Neurospora crassa] 35 0.67
ref|NP_187198.1| unknown protein; protein id: At3g05470.1 [Arabi... 29 0.81
ref|NP_726568.1| CG2052-PB [Drosophila melanogaster] gi|16182614... 34 1.1
gb|AAO52526.1| similar to Xenopus laevis (African clawed frog). ... 33 3.3
pir||T06211 C-hordein precursor - barley gi|442524|gb|AAB28161.1... 30 4.0
>gb|EAA31060.1| hypothetical protein [Neurospora crassa]
Length = 1736
Score = 35.0 bits (79), Expect = 0.67
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = -2
Query: 492 KMTPPPP*PKPFHPFFSTAEYHSLSSLSKQIPLKIHKILPSILNQNQ*YHKKRQ*LYASF 313
K PPPP PK HPFF + H SS + K K L + + + ++ + +
Sbjct: 259 KSQPPPPPPKSVHPFFQPDDIH-WSSSGPPVTSKDSKFL---AHSTKITKQAQEKVLLNN 314
Query: 312 LNPQHPKLQSSIERFIAHRI 253
L +HP L+S+ A+R+
Sbjct: 315 LMRKHPNLESASHNAWAYRL 334
>ref|NP_187198.1| unknown protein; protein id: At3g05470.1 [Arabidopsis thaliana]
gi|7596775|gb|AAF64546.1| unknown protein [Arabidopsis
thaliana]
Length = 884
Score = 28.9 bits (63), Expect(2) = 0.81
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -2
Query: 483 PPPP*PKPFHPFFSTAEYHSLSS 415
PPPP P P P FS H+LSS
Sbjct: 369 PPPPPPPPPLPQFSNKRIHTLSS 391
Score = 24.6 bits (52), Expect(2) = 0.81
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = -1
Query: 400 PIENPQDSPFNPQPKPVVSQEKTIALRFIPQPP 302
PI P P P P P Q + + P PP
Sbjct: 418 PINVPNSQPRPPPPPPPPQQLQVAGINKTPPPP 450
>ref|NP_726568.1| CG2052-PB [Drosophila melanogaster] gi|16182614|gb|AAL13533.1|
GH06573p [Drosophila melanogaster]
gi|22759406|gb|AAF59348.2| CG2052-PB [Drosophila
melanogaster]
Length = 1097
Score = 34.3 bits (77), Expect = 1.1
Identities = 29/95 (30%), Positives = 40/95 (41%), Gaps = 8/95 (8%)
Frame = -3
Query: 551 HTETHTFSH*VDQLSNKILRK*HPHHHNQSLFIPFFQLQNI--IRCHLYPSKSH*KSTRF 378
H HT +H IL+ HPHHH Q P Q Q + + H +PS S+ +S
Sbjct: 875 HHADHTQAH-----QTHILQHAHPHHHQQQQ-APQHQQQQLSHLLVHTHPSNSNSRSQSS 928
Query: 377 ------SLQSSTKTSSITRKDNSFTLHSSTPNTPS 291
SLQ+ + +SI N + S PS
Sbjct: 929 PNINVPSLQNESTAASIAMNMNVHMMRGSLDPDPS 963
>gb|AAO52526.1| similar to Xenopus laevis (African clawed frog). DNA ligase I (EC
6.5.1.1) (Polydeoxyribonucleotide synthase [ATP])
[Dictyostelium discoideum]
Length = 1192
Score = 32.7 bits (73), Expect = 3.3
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -3
Query: 371 QSSTKTSSITRKDNSFTLHSSTPNTPSCNLQ*KGSLHTESCQKVNKEVKFESKQISAEKM 192
QS+T T++ T + T+ S + ++PS +K KEV KQ+ A K+
Sbjct: 409 QSTTTTTTTTTTSTATTISSKSISSPS--------------KKEEKEVITSKKQVEATKV 454
Query: 191 EWISETQKREEME 153
E E +K +E E
Sbjct: 455 EVKKEKEKEKEKE 467
>pir||T06211 C-hordein precursor - barley gi|442524|gb|AAB28161.1| C-hordein
[Hordeum vulgare]
Length = 310
Score = 30.4 bits (67), Expect(2) = 4.0
Identities = 14/36 (38%), Positives = 18/36 (49%)
Frame = -1
Query: 400 PIENPQDSPFNPQPKPVVSQEKTIALRFIPQPPTPQ 293
PI PFN QP+ ++SQ+ PQ P PQ
Sbjct: 118 PIPYQPQQPFNQQPQQIISQQPQQPFPQQPQQPFPQ 153
Score = 20.8 bits (42), Expect(2) = 4.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = -2
Query: 516 PIKQQNSEKMTPPPP*PKPFHPF 448
P++ Q P P P+P PF
Sbjct: 82 PLQPQQPFPQQPQQPLPRPQQPF 104
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,428,524
Number of Sequences: 1393205
Number of extensions: 11660129
Number of successful extensions: 44868
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 40064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44490
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
