Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017101A_C01 KMC017101A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_242046.1| hypothetical protein XP_242046 [Rattus norvegicus] 39 0.043
ref|XP_239201.1| hypothetical protein XP_239201 [Rattus norvegicus] 38 0.056
gb|EAA29173.1| predicted protein [Neurospora crassa] 38 0.073
emb|CAD21055.1| hypothetical protein [Neurospora crassa] 38 0.073
gb|EAA26538.1| hypothetical protein [Neurospora crassa] 38 0.073
>ref|XP_242046.1| hypothetical protein XP_242046 [Rattus norvegicus]
Length = 269
Score = 38.5 bits (88), Expect = 0.043
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 324 SSGRVEAQAQAQAQAQAQAQASHRGLHQLHLPSRQSVASGGTATCQQRLPSGRRRW 491
+ + +AQAQAQAQAQAQAQA + Q+ ++ + A L RR W
Sbjct: 23 AQAQAQAQAQAQAQAQAQAQAQAQAQAQVQAQAQAQAQAQAQAQAHGYLALARRSW 78
>ref|XP_239201.1| hypothetical protein XP_239201 [Rattus norvegicus]
Length = 639
Score = 38.1 bits (87), Expect = 0.056
Identities = 30/94 (31%), Positives = 45/94 (46%), Gaps = 4/94 (4%)
Frame = +3
Query: 144 GMSNNLVSQPMPSMPMAQLEPILNKVDSSGRQMELGILG----GPVSTDPMSRPPGASND 311
G S++L + +P+ +A L + K + + IL P S PP +
Sbjct: 288 GTSDSLYNIRVPARMIALLPSVFRKCLAKRTTTRVAILTQGSLSPSEVFSTSVPPTQTQS 347
Query: 312 HAGLSSGRVEAQAQAQAQAQAQAQASHRGLHQLH 413
+ S + +AQAQAQAQAQAQAQA + Q +
Sbjct: 348 QSQ-SQAQAQAQAQAQAQAQAQAQAQAQAQAQAY 380
>gb|EAA29173.1| predicted protein [Neurospora crassa]
Length = 113
Score = 37.7 bits (86), Expect = 0.073
Identities = 27/77 (35%), Positives = 35/77 (45%)
Frame = +3
Query: 159 LVSQPMPSMPMAQLEPILNKVDSSGRQMELGILGGPVSTDPMSRPPGASNDHAGLSSGRV 338
+ + P PS P A L + SS V+ S G+ + +
Sbjct: 38 VAAPPPPSTPAATTPAQLEQTRSSSSA------SASVNEQSASVSQGSQAQAQAQAQAQA 91
Query: 339 EAQAQAQAQAQAQAQAS 389
+AQAQAQAQAQAQAQAS
Sbjct: 92 QAQAQAQAQAQAQAQAS 108
Score = 34.7 bits (78), Expect = 0.62
Identities = 25/81 (30%), Positives = 35/81 (42%)
Frame = +3
Query: 144 GMSNNLVSQPMPSMPMAQLEPILNKVDSSGRQMELGILGGPVSTDPMSRPPGASNDHAGL 323
G+ + QP P+A P ++ Q+E S + S
Sbjct: 27 GIQTTTLLQP----PVAAPPPPSTPAATTPAQLEQTRSSSSASASVNEQSASVSQGSQAQ 82
Query: 324 SSGRVEAQAQAQAQAQAQAQA 386
+ + +AQAQAQAQAQAQAQA
Sbjct: 83 AQAQAQAQAQAQAQAQAQAQA 103
Score = 31.6 bits (70), Expect = 5.2
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +3
Query: 264 PVSTDPMSRPPGASNDHAGLSSGRVEA------QAQAQAQAQAQAQASHRGLHQLHLPSR 425
P +T P S+ A S A QAQAQAQAQAQAQA + Q ++
Sbjct: 47 PAATTPAQLEQTRSSSSASASVNEQSASVSQGSQAQAQAQAQAQAQAQAQAQAQAQAQAQ 106
Query: 426 QS 431
S
Sbjct: 107 AS 108
>emb|CAD21055.1| hypothetical protein [Neurospora crassa]
Length = 1367
Score = 37.7 bits (86), Expect = 0.073
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +3
Query: 234 RQMELGILGGPVSTDPMSRPPGASNDHAGLSSGRVEAQAQAQAQAQAQAQASHRGLHQLH 413
+QME+ L + M+ A + +AQAQAQAQAQAQAQA + Q
Sbjct: 541 KQMEMERLKKEQNQKRMAMVQAQQQQQAQQQQAQQQAQAQAQAQAQAQAQAQAQAQAQAQ 600
Query: 414 LPSRQSVASGGTATCQQR 467
++Q QQ+
Sbjct: 601 AQAQQQAQQQAQQQAQQQ 618
Score = 36.6 bits (83), Expect = 0.16
Identities = 19/48 (39%), Positives = 26/48 (53%)
Frame = +3
Query: 324 SSGRVEAQAQAQAQAQAQAQASHRGLHQLHLPSRQSVASGGTATCQQR 467
+ + +AQAQAQAQAQAQAQA + Q ++Q QQ+
Sbjct: 583 AQAQAQAQAQAQAQAQAQAQAQQQAQQQAQQQAQQQAQQQAQQQAQQQ 630
Score = 35.8 bits (81), Expect = 0.28
Identities = 19/48 (39%), Positives = 26/48 (53%)
Frame = +3
Query: 324 SSGRVEAQAQAQAQAQAQAQASHRGLHQLHLPSRQSVASGGTATCQQR 467
+ + +AQAQAQAQAQAQAQA + Q ++Q QQ+
Sbjct: 579 AQAQAQAQAQAQAQAQAQAQAQAQAQQQAQQQAQQQAQQQAQQQAQQQ 626
Score = 34.7 bits (78), Expect = 0.62
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +3
Query: 333 RVEAQAQAQAQAQAQAQASHRGLHQLHLPSRQSVASGGTATCQQR 467
+ +AQAQAQAQAQAQAQA + Q ++Q QQ+
Sbjct: 578 QAQAQAQAQAQAQAQAQAQAQAQAQAQQQAQQQAQQQAQQQAQQQ 622
Score = 34.3 bits (77), Expect = 0.81
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 324 SSGRVEAQAQAQAQAQAQAQASHRGLHQLHLPSRQSVASGGTATCQQRLPS 476
+ + +AQAQAQAQAQAQ QA + Q ++Q QQ P+
Sbjct: 587 AQAQAQAQAQAQAQAQAQQQAQQQAQQQAQQQAQQQAQQQAQQQQQQVQPT 637
>gb|EAA26538.1| hypothetical protein [Neurospora crassa]
Length = 1188
Score = 37.7 bits (86), Expect = 0.073
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +3
Query: 234 RQMELGILGGPVSTDPMSRPPGASNDHAGLSSGRVEAQAQAQAQAQAQAQASHRGLHQLH 413
+QME+ L + M+ A + +AQAQAQAQAQAQAQA + Q
Sbjct: 529 KQMEMERLKKEQNQKRMAMVQAQQQQQAQQQQAQQQAQAQAQAQAQAQAQAQAQAQAQAQ 588
Query: 414 LPSRQSVASGGTATCQQR 467
++Q QQ+
Sbjct: 589 AQAQQQAQQQAQQQAQQQ 606
Score = 36.6 bits (83), Expect = 0.16
Identities = 19/48 (39%), Positives = 26/48 (53%)
Frame = +3
Query: 324 SSGRVEAQAQAQAQAQAQAQASHRGLHQLHLPSRQSVASGGTATCQQR 467
+ + +AQAQAQAQAQAQAQA + Q ++Q QQ+
Sbjct: 571 AQAQAQAQAQAQAQAQAQAQAQQQAQQQAQQQAQQQAQQQAQQQAQQQ 618
Score = 35.8 bits (81), Expect = 0.28
Identities = 19/48 (39%), Positives = 26/48 (53%)
Frame = +3
Query: 324 SSGRVEAQAQAQAQAQAQAQASHRGLHQLHLPSRQSVASGGTATCQQR 467
+ + +AQAQAQAQAQAQAQA + Q ++Q QQ+
Sbjct: 567 AQAQAQAQAQAQAQAQAQAQAQAQAQQQAQQQAQQQAQQQAQQQAQQQ 614
Score = 34.7 bits (78), Expect = 0.62
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +3
Query: 333 RVEAQAQAQAQAQAQAQASHRGLHQLHLPSRQSVASGGTATCQQR 467
+ +AQAQAQAQAQAQAQA + Q ++Q QQ+
Sbjct: 566 QAQAQAQAQAQAQAQAQAQAQAQAQAQQQAQQQAQQQAQQQAQQQ 610
Score = 34.3 bits (77), Expect = 0.81
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 324 SSGRVEAQAQAQAQAQAQAQASHRGLHQLHLPSRQSVASGGTATCQQRLPS 476
+ + +AQAQAQAQAQAQ QA + Q ++Q QQ P+
Sbjct: 575 AQAQAQAQAQAQAQAQAQQQAQQQAQQQAQQQAQQQAQQQAQQQQQQVQPT 625
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,300,397
Number of Sequences: 1393205
Number of extensions: 12903000
Number of successful extensions: 95955
Number of sequences better than 10.0: 299
Number of HSP's better than 10.0 without gapping: 56060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84045
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
