Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017071A_C01 KMC017071A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN03469.1| ubiquitin-conjugation enzyme [Glycine max] 256 2e-67
gb|AAA64427.1| ubiquitin conjugating enzyme 256 2e-67
pir||D96666 protein F22C12.2 [imported] - Arabidopsis thaliana g... 255 4e-67
ref|NP_568595.1| E2, ubiquitin-conjugating enzyme 8 (UBC8); prot... 255 4e-67
ref|NP_564828.1| E2, ubiquitin-conjugating enzyme, putative; pro... 255 4e-67
>gb|AAN03469.1| ubiquitin-conjugation enzyme [Glycine max]
Length = 148
Score = 256 bits (654), Expect = 2e-67
Identities = 120/121 (99%), Positives = 120/121 (99%)
Frame = -2
Query: 620 EDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 441
EDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD
Sbjct: 28 EDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 87
Query: 440 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAM 261
ILKEQWSPALTISK LLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAM
Sbjct: 88 ILKEQWSPALTISKGLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAM 147
Query: 260 G 258
G
Sbjct: 148 G 148
>gb|AAA64427.1| ubiquitin conjugating enzyme
Length = 148
Score = 256 bits (653), Expect = 2e-67
Identities = 119/121 (98%), Positives = 120/121 (98%)
Frame = -2
Query: 620 EDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 441
EDMFHWQATI+GPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD
Sbjct: 28 EDMFHWQATIVGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 87
Query: 440 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAM 261
ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYEATARSWTQKYAM
Sbjct: 88 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRTKYEATARSWTQKYAM 147
Query: 260 G 258
G
Sbjct: 148 G 148
>pir||D96666 protein F22C12.2 [imported] - Arabidopsis thaliana
gi|6692118|gb|AAF24583.1|AC007764_25 F22C12.2
[Arabidopsis thaliana]
Length = 146
Score = 255 bits (651), Expect = 4e-67
Identities = 117/121 (96%), Positives = 121/121 (99%)
Frame = -2
Query: 620 EDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 441
EDMFHWQATIMGP+DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLD
Sbjct: 26 EDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLD 85
Query: 440 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAM 261
ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE+TARSWTQKYAM
Sbjct: 86 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAM 145
Query: 260 G 258
G
Sbjct: 146 G 146
>ref|NP_568595.1| E2, ubiquitin-conjugating enzyme 8 (UBC8); protein id: At5g41700.1,
supported by cDNA: 16865., supported by cDNA:
gi_13358201, supported by cDNA: gi_13877988, supported
by cDNA: gi_15451029, supported by cDNA: gi_16323054,
supported by cDNA: gi_17104718, supported by cDNA:
gi_18377525 [Arabidopsis thaliana]
gi|464985|sp|P35131|UBC8_ARATH Ubiquitin-conjugating
enzyme E2-17 kDa 8 (Ubiquitin-protein ligase 8)
(Ubiquitin carrier protein 8) (UBCAT4A)
gi|398699|emb|CAA78713.1| ubiquitin conjugating enzyme
homolog [Arabidopsis thaliana]
gi|10178024|dbj|BAB11476.1| ubiquitin-conjugating enzyme
E2-17 kD 8 (ubiquitin-protein ligase 8) (ubiquitin
carrier protein 8) [Arabidopsis thaliana]
gi|11762166|gb|AAG40361.1|AF325009_1 AT5g41700
[Arabidopsis thaliana]
gi|13877989|gb|AAK44072.1|AF370257_1 putative E2,
ubiquitin-conjugating enzyme UBC8 [Arabidopsis thaliana]
gi|15451030|gb|AAK96786.1| ubiquitin-conjugating enzyme
E2-17 kD 8 (ubiquitin-protein ligase 8) (ubiquitin
carrier protein 8) [Arabidopsis thaliana]
gi|16323055|gb|AAL15262.1| AT5g41700/MBK23_24
[Arabidopsis thaliana] gi|17104719|gb|AAL34248.1|
putative ubiquitin-conjugating enzyme 8 [Arabidopsis
thaliana] gi|18377526|gb|AAL66929.1|
ubiquitin-conjugating enzyme E2-17 kD 8 [Arabidopsis
thaliana]
Length = 148
Score = 255 bits (651), Expect = 4e-67
Identities = 118/121 (97%), Positives = 121/121 (99%)
Frame = -2
Query: 620 EDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 441
EDMFHWQATIMGPA+SPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD
Sbjct: 28 EDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 87
Query: 440 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAM 261
ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATAR+WTQKYAM
Sbjct: 88 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAM 147
Query: 260 G 258
G
Sbjct: 148 G 148
>ref|NP_564828.1| E2, ubiquitin-conjugating enzyme, putative; protein id:
At1g64230.1, supported by cDNA: gi_14326528 [Arabidopsis
thaliana] gi|14326529|gb|AAK60309.1|AF385718_1
At1g64230/F22C12_17 [Arabidopsis thaliana]
gi|20136192|gb|AAM11574.1|AF480945_1 ubiquitin
conjugating enzyme UBC9A [Arabidopsis thaliana]
gi|22137310|gb|AAM91500.1| At1g64230/F22C12_17
[Arabidopsis thaliana]
Length = 148
Score = 255 bits (651), Expect = 4e-67
Identities = 117/121 (96%), Positives = 121/121 (99%)
Frame = -2
Query: 620 EDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLD 441
EDMFHWQATIMGP+DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLD
Sbjct: 28 EDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLD 87
Query: 440 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAM 261
ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE+TARSWTQKYAM
Sbjct: 88 ILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAM 147
Query: 260 G 258
G
Sbjct: 148 G 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,435,838
Number of Sequences: 1393205
Number of extensions: 13839164
Number of successful extensions: 46172
Number of sequences better than 10.0: 731
Number of HSP's better than 10.0 without gapping: 43683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45797
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
