Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017064A_C01 KMC017064A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87300.1| unknown protein [Arabidopsis thaliana] 50 1e-05
gb|AAL10497.1| At3g07700/F17A17.4 [Arabidopsis thaliana] 50 1e-05
ref|NP_566315.1| expressed protein; protein id: At3g07700.1, sup... 50 1e-05
gb|AAM67100.1| unknown [Arabidopsis thaliana] 50 1e-05
ref|NP_704677.1| hypothetical protein, conserved [Plasmodium fal... 32 4.3
>gb|AAL87300.1| unknown protein [Arabidopsis thaliana]
Length = 566
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = -2
Query: 516 GSFLGAGVFLTLFLRSMQRVKKLDKFENMI 427
GSF+GAG+F+ L LRSMQRV KLDKFE MI
Sbjct: 537 GSFIGAGIFMLLVLRSMQRVNKLDKFEKMI 566
>gb|AAL10497.1| At3g07700/F17A17.4 [Arabidopsis thaliana]
Length = 695
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = -2
Query: 516 GSFLGAGVFLTLFLRSMQRVKKLDKFENMI 427
GSF+GAG+F+ L LRSMQRV KLDKFE MI
Sbjct: 666 GSFIGAGIFMLLVLRSMQRVNKLDKFEKMI 695
>ref|NP_566315.1| expressed protein; protein id: At3g07700.1, supported by cDNA:
95043., supported by cDNA: gi_15983800 [Arabidopsis
thaliana]
Length = 695
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = -2
Query: 516 GSFLGAGVFLTLFLRSMQRVKKLDKFENMI 427
GSF+GAG+F+ L LRSMQRV KLDKFE MI
Sbjct: 666 GSFIGAGIFMLLVLRSMQRVNKLDKFEKMI 695
>gb|AAM67100.1| unknown [Arabidopsis thaliana]
Length = 695
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = -2
Query: 516 GSFLGAGVFLTLFLRSMQRVKKLDKFENMI 427
GSF+GAG+F+ L LRSMQRV KLDKFE MI
Sbjct: 666 GSFIGAGIFMLLVLRSMQRVNKLDKFEKMI 695
>ref|NP_704677.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|23505037|emb|CAD51820.1| hypothetical protein,
conserved [Plasmodium falciparum 3D7]
Length = 659
Score = 32.0 bits (71), Expect = 4.3
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = +1
Query: 106 VY*DKFIQLRLYLCHWKYMNPIYNFYV 186
+Y + F+QL++ L H KY N IY F++
Sbjct: 555 IYKNNFLQLKMKLSHRKYKNDIYPFFI 581
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,533,421
Number of Sequences: 1393205
Number of extensions: 7823159
Number of successful extensions: 18179
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18165
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
