Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017059A_C01 KMC017059A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA36171.1| FEN-1 [Oryza sativa (japonica cultivar-group)] 125 3e-28
ref|NP_198020.1| flap endonuclease - like protein; protein id: A... 109 2e-23
gb|EAA13029.1| agCP14453 [Anopheles gambiae str. PEST] 80 2e-14
ref|NP_594972.1| dna repair protein Rad2p [Schizosaccharomyces p... 79 3e-14
ref|NP_523765.1| Flap endonuclease 1 CG8648-PA gi|7446868|pir||T... 68 8e-11
>dbj|BAA36171.1| FEN-1 [Oryza sativa (japonica cultivar-group)]
Length = 380
Score = 125 bits (315), Expect = 3e-28
Identities = 62/85 (72%), Positives = 72/85 (83%), Gaps = 1/85 (1%)
Frame = -3
Query: 525 LKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNQSSQGRLESFFKPAPSSSVPIK 346
LKW+APDEEGL+ FLV ENGFN DRVTKAIEKIK AKN+SSQGRLESFFKP S+SVP+K
Sbjct: 296 LKWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLK 355
Query: 345 RKETPDNNAKE-THKKTKGSGGRKK 274
RK+T + K +KKTKG+GG+KK
Sbjct: 356 RKDTSEKPTKAVANKKTKGAGGKKK 380
>ref|NP_198020.1| flap endonuclease - like protein; protein id: At5g26675.1
[Arabidopsis thaliana]
Length = 465
Score = 109 bits (273), Expect = 2e-23
Identities = 50/67 (74%), Positives = 61/67 (90%)
Frame = -3
Query: 540 DDELNLKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNQSSQGRLESFFKPAPSS 361
+++L++KW++PDEEG++ FLVNENGFN DRVTKAIEKIK AKN+SSQGRLESFFKP +S
Sbjct: 305 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANS 364
Query: 360 SVPIKRK 340
SVP KRK
Sbjct: 365 SVPAKRK 371
>gb|EAA13029.1| agCP14453 [Anopheles gambiae str. PEST]
Length = 387
Score = 79.7 bits (195), Expect = 2e-14
Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Frame = -3
Query: 537 DELNLKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNQSSQGRLESFFKPAPSSS 358
D + LKWS PDEEGL+ FL + FN DR+ +KI KN ++QGRL+SFFK PS+
Sbjct: 296 DTIELKWSEPDEEGLVKFLCGDRQFNEDRIRSGAKKILKTKNTATQGRLDSFFKVLPSTG 355
Query: 357 VPIKRKETPDNNAKETHKKTKGSG---GRKKK 271
P ++ + A + KK K G GRK K
Sbjct: 356 TPKRKVDEKKPLAGSSAKKAKTGGATRGRKPK 387
>ref|NP_594972.1| dna repair protein Rad2p [Schizosaccharomyces pombe]
gi|730469|sp|P39750|RAD2_SCHPO DNA repair protein rad2
gi|1362231|pir||A56054 DNA repair endonuclease rad2 -
fission yeast (Schizosaccharomyces pombe)
gi|2408077|emb|CAB16282.1| FEN-1 endonuclease; involved
in Okazaki fragment processing; involved in DNA
replication repair; Uve1p dependent repair; XP-G family
[Schizosaccharomyces pombe] gi|4456854|emb|CAB36991.1|
RAD2 protein [Schizosaccharomyces pombe]
Length = 380
Score = 79.3 bits (194), Expect = 3e-14
Identities = 41/90 (45%), Positives = 54/90 (59%), Gaps = 1/90 (1%)
Frame = -3
Query: 537 DELNLKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNQSSQGRLESFFKPAPSSS 358
+E+ LKW +PD +G+I FLV E GFN DRV I +++ A QGRL+SFFKP PSS
Sbjct: 293 EEIELKWKSPDADGIIQFLVKEKGFNEDRVKLGINRLEKASKTIPQGRLDSFFKPVPSS- 351
Query: 357 VPIKRKETPD-NNAKETHKKTKGSGGRKKK 271
P K +T +AK KG +KK+
Sbjct: 352 -PKKPVDTKSKGSAKRKRDSNKGGESKKKR 380
>ref|NP_523765.1| Flap endonuclease 1 CG8648-PA gi|7446868|pir||T13692 hypothetical
protein EG0003.3 - fruit fly (Drosophila melanogaster)
gi|3929699|emb|CAA21320.1| 1-evidence=predicted by
match~1-match_accession=SWISS-PROT:P39748~1-
match_description=FLAP ENDONUCLEASE-1 (MATURATION FACTOR
1) (MF1).~1-match_species=HOMO SAPIENS
(HUMAN).~1-method=blastx;1.4.9~1-method_score=102.00;
1129.00~1-evidence_end~2-evidence=predicted by
motif~2-match_accession=PROSITE:PS00841~2-
match_description=XPG protein signature
1.~2-method=ppsearch;~2-evidence_end~3-
evidence=predicted by
motif~3-match_accession=PROSITE:PS00842~3-
match_description=XPG protein signature
2.~3-method=ppsearch> gi|7302871|gb|AAF57944.1|
CG8648-PA [Drosophila melanogaster]
Length = 385
Score = 67.8 bits (164), Expect = 8e-11
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Frame = -3
Query: 537 DELNLKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNQSSQGRLESFFKPAPSSS 358
D ++LKW PDEEGL+ FL + FN +RV +K+ +K +Q RL+SFFK PS+
Sbjct: 292 DSIDLKWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFFKTLPSTP 351
Query: 357 VPIKRKETPDNNAKET--HKKTKGSGG 283
+ AK++ +KK K SGG
Sbjct: 352 NATNAAKRKAEEAKKSANNKKAKTSGG 378
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,544,207
Number of Sequences: 1393205
Number of extensions: 9027836
Number of successful extensions: 23270
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 22293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23234
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
