Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017050A_C01 KMC017050A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568408.1| F-box protein family; protein id: At5g21040.1, ... 143 2e-33
emb|CAB51833.1| l1332.4 [Oryza sativa (indica cultivar-group)] 130 8e-30
ref|NP_594559.1| WD-repeat protein [Schizosaccharomyces pombe] g... 37 0.12
pir||S62507 hypothetical trp-asp repeat-containing protein - fis... 37 0.12
pir||E36788 hypothetical protein ORF22 - ictalurid herpesvirus 1... 35 0.44
>ref|NP_568408.1| F-box protein family; protein id: At5g21040.1, supported by cDNA:
gi_15081722 [Arabidopsis thaliana]
gi|15081723|gb|AAK82516.1| T10F18_70/T10F18_70
[Arabidopsis thaliana] gi|27363380|gb|AAO11609.1|
At5g21040/T10F18_70 [Arabidopsis thaliana]
Length = 539
Score = 143 bits (360), Expect = 2e-33
Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 3/121 (2%)
Frame = -1
Query: 516 RATKVKYLSEAIVEPPQRMLHGFKSHLYSVNIGADRIVCGGEEGVVRIWNFTEALEIERR 337
R K +S + VEPPQRMLHGF S+L+SV++G DRIVCGGEEG VRIWNFT+ALEIERR
Sbjct: 419 RCAYSKRISSSTVEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEGTVRIWNFTQALEIERR 478
Query: 336 VRALRGIRLENRMRRRKLPTEISSKGGRTDPCSVAAVQ---KNSGSCIWPHKRGMSGKLK 166
RAL+G+R ENRMRRR++ E+++K GR D CS+AA + + W KR SGK K
Sbjct: 479 TRALKGMRHENRMRRRRMQMEMNAKNGRPDQCSIAAHKNPINGERNRAWHSKRRASGKAK 538
Query: 165 A 163
A
Sbjct: 539 A 539
>emb|CAB51833.1| l1332.4 [Oryza sativa (indica cultivar-group)]
Length = 562
Score = 130 bits (328), Expect = 8e-30
Identities = 64/127 (50%), Positives = 88/127 (68%), Gaps = 4/127 (3%)
Frame = -1
Query: 531 RALRKRATKVKYLSEAIVEPPQRMLHGFKSHLYSVNIGADRIVCGGEEGVVRIWNFTEAL 352
R K+ +VK + +EPPQRMLHGF L+SV IGADRIVCGGE+G V++WNF+EAL
Sbjct: 436 RKSSKQPFRVKNFDPSSIEPPQRMLHGFGCDLFSVAIGADRIVCGGEDGAVKVWNFSEAL 495
Query: 351 EIERRVRALRGIRLENRMRRRKLPTEISSKGGRTDPCSVAAVQKN----SGSCIWPHKRG 184
EIE+R +ALR +R ENRMRR+K E+++ G R+D C A+++N S W KR
Sbjct: 496 EIEKRAQALRSMRQENRMRRKKAQVEMNANGRRSDQCGSIAMKRNQLKGDKSVTWHSKRA 555
Query: 183 MSGKLKA 163
++ K+K+
Sbjct: 556 INDKVKS 562
>ref|NP_594559.1| WD-repeat protein [Schizosaccharomyces pombe]
gi|19862893|sp|Q09855|POFB_SCHPO F-box/WD-repeat protein
pof11 gi|11346448|pir||T50211 WD-repeat protein
[imported] - fission yeast (Schizosaccharomyces pombe)
gi|6723888|emb|CAB66464.1| WD-repeat protein
[Schizosaccharomyces pombe] gi|14090330|dbj|BAB55543.1|
F-box protein Pof11 [Schizosaccharomyces pombe]
Length = 506
Score = 37.4 bits (85), Expect = 0.12
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 465 RMLHGFKSHLYSVNIGADRIVCGGEEGVVRIWNF 364
RML G + + +V ++IV GG +G VRIWNF
Sbjct: 423 RMLQGHEDLIRTVRFNDEKIVSGGYDGTVRIWNF 456
>pir||S62507 hypothetical trp-asp repeat-containing protein - fission yeast
(Schizosaccharomyces pombe) (fragment)
gi|1044927|emb|CAA91423.1| hypothetical trp-asp
repeat-containing protein [Schizosaccharomyces pombe]
Length = 267
Score = 37.4 bits (85), Expect = 0.12
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 465 RMLHGFKSHLYSVNIGADRIVCGGEEGVVRIWNF 364
RML G + + +V ++IV GG +G VRIWNF
Sbjct: 184 RMLQGHEDLIRTVRFNDEKIVSGGYDGTVRIWNF 217
>pir||E36788 hypothetical protein ORF22 - ictalurid herpesvirus 1 (strain auburn
1)
Length = 1404
Score = 35.4 bits (80), Expect = 0.44
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 5/37 (13%)
Frame = -1
Query: 351 EIERRVRAL----RGIRLENRMRRRKL-PTEISSKGG 256
E+E+RV+ L + IR ENRM RRK+ PTE ++KGG
Sbjct: 605 ELEQRVKELVAEKKSIRHENRMARRKMDPTEAAAKGG 641
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,469,218
Number of Sequences: 1393205
Number of extensions: 9672570
Number of successful extensions: 24680
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 23889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24671
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
