Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017044A_C01 KMC017044A_c01
(461 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA84057.1| maturase [Camassia cusickii] 32 3.2
ref|XP_232016.1| similar to immunoglobulin kappa light chain [Mu... 31 5.5
>dbj|BAA84057.1| maturase [Camassia cusickii]
Length = 379
Score = 32.0 bits (71), Expect = 3.2
Identities = 21/68 (30%), Positives = 34/68 (49%)
Frame = +1
Query: 193 LYVSQSSITTVEDGALDQTM*CGSNFVSYFHFENQALSKSSTQNGRVLSYAFTLSSF*ER 372
+Y I++V D +Q M G N Y HF++Q +S+S +L +S F E+
Sbjct: 18 IYQQNYFISSVNDS--NQKMFVGHNNFFYSHFDSQMISESFAIIVEILFSLRLVSFFSEK 75
Query: 373 SELCPYHH 396
E+ YH+
Sbjct: 76 KEIPKYHN 83
>ref|XP_232016.1| similar to immunoglobulin kappa light chain [Mus musculus] [Rattus
norvegicus]
Length = 151
Score = 31.2 bits (69), Expect = 5.5
Identities = 14/37 (37%), Positives = 22/37 (58%)
Frame = -3
Query: 342 IRQDTAILS*RLGQCLVLKMKVRDKIGSALHCLIKCT 232
+ Q TAILS LG+ + L + IG+ +HC++ T
Sbjct: 73 LTQSTAILSVTLGESISLSCRASPSIGTNIHCMLPNT 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 351,944,615
Number of Sequences: 1393205
Number of extensions: 6685690
Number of successful extensions: 14815
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14813
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
