Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017043A_C01 KMC017043A_c01
(782 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172146.1| unknown protein; protein id: At1g06590.1 [Arabi... 202 6e-51
gb|AAN10197.1| APC5 [Arabidopsis thaliana] 202 6e-51
pir||C86201 protein F12K11.7 [imported] - Arabidopsis thaliana g... 202 6e-51
gb|AAH45458.1| Similar to anaphase promoting complex subunit 5 [... 46 5e-04
ref|NP_057321.2| anaphase-promoting complex subunit 5; periodont... 42 0.010
>ref|NP_172146.1| unknown protein; protein id: At1g06590.1 [Arabidopsis thaliana]
Length = 221
Score = 202 bits (513), Expect = 6e-51
Identities = 100/134 (74%), Positives = 115/134 (85%)
Frame = -3
Query: 780 FNLDLLKASATLTLAELWLSLGSNHATRALNLVHGAFPMILGHGGLELCSRAYIVEAKCY 601
FNLDLLKASATLTLAELWL LGSNH RAL+L+HGAFPMILGHGGLEL +RAYI EA CY
Sbjct: 82 FNLDLLKASATLTLAELWLGLGSNHTKRALDLLHGAFPMILGHGGLELRARAYIFEANCY 141
Query: 600 LCDTNFNIFEDHNIVIDSLRQASEELQLLEFHELAAEAFYLMAMVYDKLGQFEEREEAAA 421
L D + ++ D + V+DSLRQAS+ELQ LE+HELAAEA YLMAMVYDKLG+ +EREEAA+
Sbjct: 142 LSDPSSSVSTDSDTVLDSLRQASDELQALEYHELAAEASYLMAMVYDKLGRLDEREEAAS 201
Query: 420 SFQKHTLALTNPQD 379
F+KH +AL NPQD
Sbjct: 202 LFKKHIIALENPQD 215
>gb|AAN10197.1| APC5 [Arabidopsis thaliana]
Length = 916
Score = 202 bits (513), Expect = 6e-51
Identities = 100/134 (74%), Positives = 115/134 (85%)
Frame = -3
Query: 780 FNLDLLKASATLTLAELWLSLGSNHATRALNLVHGAFPMILGHGGLELCSRAYIVEAKCY 601
FNLDLLKASATLTLAELWL LGSNH RAL+L+HGAFPMILGHGGLEL +RAYI EA CY
Sbjct: 777 FNLDLLKASATLTLAELWLGLGSNHTKRALDLLHGAFPMILGHGGLELRARAYIFEANCY 836
Query: 600 LCDTNFNIFEDHNIVIDSLRQASEELQLLEFHELAAEAFYLMAMVYDKLGQFEEREEAAA 421
L D + ++ D + V+DSLRQAS+ELQ LE+HELAAEA YLMAMVYDKLG+ +EREEAA+
Sbjct: 837 LSDPSSSVSTDSDTVLDSLRQASDELQALEYHELAAEASYLMAMVYDKLGRLDEREEAAS 896
Query: 420 SFQKHTLALTNPQD 379
F+KH +AL NPQD
Sbjct: 897 LFKKHIIALENPQD 910
>pir||C86201 protein F12K11.7 [imported] - Arabidopsis thaliana
gi|6692677|gb|AAF24811.1|AC007592_4 F12K11.7 [Arabidopsis
thaliana]
Length = 819
Score = 202 bits (513), Expect = 6e-51
Identities = 100/134 (74%), Positives = 115/134 (85%)
Frame = -3
Query: 780 FNLDLLKASATLTLAELWLSLGSNHATRALNLVHGAFPMILGHGGLELCSRAYIVEAKCY 601
FNLDLLKASATLTLAELWL LGSNH RAL+L+HGAFPMILGHGGLEL +RAYI EA CY
Sbjct: 680 FNLDLLKASATLTLAELWLGLGSNHTKRALDLLHGAFPMILGHGGLELRARAYIFEANCY 739
Query: 600 LCDTNFNIFEDHNIVIDSLRQASEELQLLEFHELAAEAFYLMAMVYDKLGQFEEREEAAA 421
L D + ++ D + V+DSLRQAS+ELQ LE+HELAAEA YLMAMVYDKLG+ +EREEAA+
Sbjct: 740 LSDPSSSVSTDSDTVLDSLRQASDELQALEYHELAAEASYLMAMVYDKLGRLDEREEAAS 799
Query: 420 SFQKHTLALTNPQD 379
F+KH +AL NPQD
Sbjct: 800 LFKKHIIALENPQD 813
>gb|AAH45458.1| Similar to anaphase promoting complex subunit 5 [Danio rerio]
Length = 761
Score = 46.2 bits (108), Expect = 5e-04
Identities = 34/126 (26%), Positives = 54/126 (41%), Gaps = 4/126 (3%)
Frame = -3
Query: 777 NLDLLKASATLTLAELWLSLGSNHATRALNLVHGAFPMILGHGGLELCSRAYIVEAKCYL 598
NL L + L LA L LG + +AL LV +L HG L RA ++ A+C +
Sbjct: 621 NLQSLTSETLLHLAFTQLMLGISE--QALGLVQDVLESVLAHGSLMDKGRALLLAARCQM 678
Query: 597 CDTNFNIFEDH----NIVIDSLRQASEELQLLEFHELAAEAFYLMAMVYDKLGQFEEREE 430
E + + +L +A+ L+ E + +YL A ++ LG +R
Sbjct: 679 ASAGAAAQEHRLSAVELAVHTLDEAAVYFSRLDCKERMRDIYYLQARLHQTLGNISQRNR 738
Query: 429 AAASFQ 412
A F+
Sbjct: 739 CAMLFR 744
>ref|NP_057321.2| anaphase-promoting complex subunit 5; periodontal ligament
fibroblast protein [Homo sapiens]
gi|12654503|gb|AAH01081.1|AAH01081 anaphase-promoting
complex subunit 5 [Homo sapiens]
gi|12804993|gb|AAH01950.1|AAH01950 Similar to
anaphase-promoting complex subunit 5 [Homo sapiens]
gi|13623411|gb|AAH06301.1|AAH06301 anaphase-promoting
complex subunit 5 [Homo sapiens]
Length = 755
Score = 42.0 bits (97), Expect = 0.010
Identities = 35/128 (27%), Positives = 54/128 (41%), Gaps = 4/128 (3%)
Frame = -3
Query: 780 FNLDLLKASATLTLAELWLSLGSNHATRALNLVHGAFPMILGHGGLELCSRAYIVEAKCY 601
+ L L + L LA L LG +AL+L+H A IL G + RA + AKC
Sbjct: 614 YRLQYLASETVLNLAFAQLILGIPE--QALSLLHMAIEPILADGAILDKGRAMFLVAKCQ 671
Query: 600 LCDT----NFNIFEDHNIVIDSLRQASEELQLLEFHELAAEAFYLMAMVYDKLGQFEERE 433
+ E I++L +A ++ E + Y A +Y LG+ +ER
Sbjct: 672 VASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARLYHTLGKTQERN 731
Query: 432 EAAASFQK 409
A F++
Sbjct: 732 RCAMLFRQ 739
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 635,372,993
Number of Sequences: 1393205
Number of extensions: 13829901
Number of successful extensions: 52780
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 46106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52351
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38935490438
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
