Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017034A_C01 KMC017034A_c01
(664 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172004.1| similar to DNA repair protein-like; protein id:... 144 1e-33
ref|NP_171767.1| hypothetical protein; protein id: At1g02670.1 [... 131 9e-30
pir||G86156 T14P4.5 protein - Arabidopsis thaliana gi|9972383|gb... 130 1e-29
pir||D86185 hypothetical protein [imported] - Arabidopsis thalia... 119 3e-26
gb|AAO49697.1| similar to Arabidopsis thaliana (Mouse-ear cress)... 114 2e-24
>ref|NP_172004.1| similar to DNA repair protein-like; protein id: At1g05120.1
[Arabidopsis thaliana]
Length = 833
Score = 144 bits (362), Expect = 1e-33
Identities = 68/91 (74%), Positives = 77/91 (83%)
Frame = -2
Query: 654 AIKRFNDDPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKP 475
AI +F +DPDC+ FL+SLKA GVALNLTVASHVF+M+PWWNP E+QAQDRIHRIGQ KP
Sbjct: 722 AINKFKEDPDCRVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKP 781
Query: 474 IRVVKFITENTVEERILELHTKKEHVSEGLI 382
IRVV+FI ENTVEERIL L KKE V EG +
Sbjct: 782 IRVVRFIIENTVEERILRLQKKKELVFEGTV 812
>ref|NP_171767.1| hypothetical protein; protein id: At1g02670.1 [Arabidopsis
thaliana]
Length = 678
Score = 131 bits (329), Expect = 9e-30
Identities = 60/92 (65%), Positives = 74/92 (80%)
Frame = -2
Query: 657 AAIKRFNDDPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNK 478
AA+K F ++PDC+ L+SL+A GVALNLT ASHVF+M+PWWNP E+QAQDRIHRIGQ K
Sbjct: 566 AALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCK 625
Query: 477 PIRVVKFITENTVEERILELHTKKEHVSEGLI 382
P+RVV+FI E TVEE+IL L KKE + E +
Sbjct: 626 PVRVVRFIMEKTVEEKILTLQKKKEDLFESTL 657
>pir||G86156 T14P4.5 protein - Arabidopsis thaliana
gi|9972383|gb|AAG10633.1|AC022521_11 Similar nucleotide
excision repair proteins [Arabidopsis thaliana]
Length = 627
Score = 130 bits (328), Expect = 1e-29
Identities = 60/89 (67%), Positives = 73/89 (81%)
Frame = -2
Query: 657 AAIKRFNDDPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNK 478
AA+K F ++PDC+ L+SL+A GVALNLT ASHVF+M+PWWNP E+QAQDRIHRIGQ K
Sbjct: 483 AALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCK 542
Query: 477 PIRVVKFITENTVEERILELHTKKEHVSE 391
P+RVV+FI E TVEE+IL L KKE + E
Sbjct: 543 PVRVVRFIMEKTVEEKILTLQKKKEDLFE 571
>pir||D86185 hypothetical protein [imported] - Arabidopsis thaliana
gi|4056415|gb|AAC97989.1|AAC97989 Similar to the end of
DNA repair protein gb|X74615 (rad8) gene. [Arabidopsis
thaliana]
Length = 95
Score = 119 bits (299), Expect = 3e-26
Identities = 58/74 (78%), Positives = 63/74 (84%)
Frame = -2
Query: 603 LKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRVVKFITENTVEERIL 424
LKA GVALNLTVASHVF+M+PWWNP E+QAQDRIHRIGQ KPIRVV+FI ENTVEERIL
Sbjct: 1 LKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERIL 60
Query: 423 ELHTKKEHVSEGLI 382
L KKE V EG +
Sbjct: 61 RLQKKKELVFEGTV 74
>gb|AAO49697.1| similar to Arabidopsis thaliana (Mouse-ear cress). DNA repair
protein RAD5 protein [Dictyostelium discoideum]
Length = 604
Score = 114 bits (284), Expect = 2e-24
Identities = 48/88 (54%), Positives = 70/88 (79%)
Frame = -2
Query: 654 AIKRFNDDPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKP 475
AIKRF ++P+ K FL+S+KA G+ LNL ASHVFLM+PWWNP E+QA DR++RIGQNK
Sbjct: 496 AIKRFKEEPNVKIFLISIKAGGLGLNLVAASHVFLMDPWWNPSTEEQAIDRVYRIGQNKN 555
Query: 474 IRVVKFITENTVEERILELHTKKEHVSE 391
+ V++F+ ++++EERIL L K+ +++
Sbjct: 556 VNVIRFLIKDSIEERILNLQKSKKDLAK 583
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,234,134
Number of Sequences: 1393205
Number of extensions: 11264009
Number of successful extensions: 28097
Number of sequences better than 10.0: 678
Number of HSP's better than 10.0 without gapping: 27377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28094
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
