Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017033A_C01 KMC017033A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL59021.1|AC087182_4 putative cell cycle regulatory protein ... 80 1e-14
ref|NP_186917.1| hypothetical protein; protein id: At3g02680.1 [... 62 4e-09
gb|AAH44773.1| nibrin [Mus musculus] 34 1.2
gb|AAG47947.1|AF230342_1 Nijmegen breakage syndrome 1 [Gallus ga... 34 1.2
ref|NP_765383.1| DNA topoisomerase III topB [Staphylococcus epid... 33 1.6
>gb|AAL59021.1|AC087182_4 putative cell cycle regulatory protein [Oryza sativa]
Length = 560
Score = 80.5 bits (197), Expect = 1e-14
Identities = 39/106 (36%), Positives = 63/106 (58%)
Frame = -3
Query: 502 IVYSPDLVVRDINILTNTSTAPNSSVPNFKRFRKGPTQSGNSFDHLVPFAKYPYQDSGSG 323
++Y+ +LVV+ I + + NFKRFRK SGNSF L+P+++ PY++S
Sbjct: 454 VIYTQNLVVKSILQSARAESIETGGI-NFKRFRKRGAVSGNSFKDLIPYSREPYRESDYE 512
Query: 322 NDEMVEYVKEEKRRKPTEAMADDLFNNEKARKRGTTGRGTAGSLQG 185
+ ++++EEK+R+ EA+A+DLFNN K +K+ G L G
Sbjct: 513 RGTVTDFMREEKKRRQMEAIAEDLFNNAKPKKKAAAGSSIHTMLTG 558
>ref|NP_186917.1| hypothetical protein; protein id: At3g02680.1 [Arabidopsis
thaliana] gi|6957731|gb|AAF32475.1| hypothetical protein
[Arabidopsis thaliana]
Length = 171
Score = 62.0 bits (149), Expect = 4e-09
Identities = 29/61 (47%), Positives = 37/61 (60%)
Frame = -3
Query: 520 ENGYSVIVYSPDLVVRDINILTNTSTAPNSSVPNFKRFRKGPTQSGNSFDHLVPFAKYPY 341
E G S I+Y+ DL+VRD+ + V +FKRFRKG GNSF L+PFAK PY
Sbjct: 111 ETGKSEIIYTQDLIVRDLRSTRKVQSTGGEGVVDFKRFRKGNVTCGNSFSSLIPFAKDPY 170
Query: 340 Q 338
+
Sbjct: 171 K 171
>gb|AAH44773.1| nibrin [Mus musculus]
Length = 751
Score = 33.9 bits (76), Expect = 1.2
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Frame = -3
Query: 475 RDINILTNTSTAPN------SSVPNFKRFRKGPTQSGNSFDHLVPFAKYPYQDSGSGNDE 314
R + + + ST+ N S+ NFK+F+K H++ + + N E
Sbjct: 658 RSLVVSKHNSTSRNLCVNDCGSLKNFKKFKKATFPGAGKLPHIIGGSDLVGHHARK-NTE 716
Query: 313 MVEYVKEE----KRRKPTEAMADDLFNNEKARKR 224
+ E++K+E K++ E++ADDLF KR
Sbjct: 717 LEEWLKQEMEVQKQQAKEESLADDLFRYNPNVKR 750
>gb|AAG47947.1|AF230342_1 Nijmegen breakage syndrome 1 [Gallus gallus]
Length = 753
Score = 33.9 bits (76), Expect = 1.2
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = -3
Query: 421 NFKRFRKGPTQSGNSFDHLVPFAKYPYQDSGSGNDEMVEYVKEE----KRRKPTEAMADD 254
NFK FRK P +++ + + N E+ E+++EE RR E++ADD
Sbjct: 683 NFKTFRKVPYPGAGQLPYIIGGSDLVAHQARK-NSELEEWLREELEEQNRRAREESLADD 741
Query: 253 LFNNEKARKR 224
LF + KR
Sbjct: 742 LFRYDPNVKR 751
>ref|NP_765383.1| DNA topoisomerase III topB [Staphylococcus epidermidis ATCC 12228]
gi|27316294|gb|AAO05469.1|AE016750_74 DNA topoisomerase
III topB [Staphylococcus epidermidis ATCC 12228]
Length = 711
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 3/48 (6%)
Frame = -3
Query: 418 FKRFRKGPTQSGNSFDHLVPFAK---YPYQDSGSGNDEMVEYVKEEKR 284
+KR++ GP ++ N+ HL K YP DS D+MV+ ++E R
Sbjct: 279 YKRYKMGPKETLNTLQHLYERHKLVTYPRTDSNYLTDDMVDTIQERLR 326
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,357,855
Number of Sequences: 1393205
Number of extensions: 9778771
Number of successful extensions: 27648
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 26795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27625
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
