Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017026A_C01 KMC017026A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178234.1| putative ribosomal protein L7; protein id: At2g... 62 4e-12
ref|NP_671959.1| 60S ribosomal protein L7; protein id: At2g44120... 62 1e-11
ref|NP_187967.1| ribosomal protein, putative; protein id: At3g13... 61 1e-11
ref|NP_181940.2| 60S ribosomal protein L7; protein id: At2g44120... 62 1e-11
prf||1909359B ribosomal protein L7 62 2e-11
>ref|NP_178234.1| putative ribosomal protein L7; protein id: At2g01250.1, supported
by cDNA: 13298., supported by cDNA: gi_13877566,
supported by cDNA: gi_15028382, supported by cDNA:
gi_19310656, supported by cDNA: gi_20148738 [Arabidopsis
thaliana] gi|25295066|pir||D84422 60S ribosomal protein
L7 [imported] - Arabidopsis thaliana
gi|4262232|gb|AAD14525.1| putative ribosomal protein L7
[Arabidopsis thaliana]
gi|13877567|gb|AAK43861.1|AF370484_1 60S ribosomal
protein L7 [Arabidopsis thaliana]
gi|15028383|gb|AAK76668.1| putative ribosomal protein L7
[Arabidopsis thaliana] gi|19310657|gb|AAL85059.1|
putative ribosomal protein L7 [Arabidopsis thaliana]
gi|20148739|gb|AAM10260.1| 60S ribosomal protein L7
[Arabidopsis thaliana] gi|21537351|gb|AAM61692.1|
putative ribosomal protein L7 [Arabidopsis thaliana]
Length = 242
Score = 61.6 bits (148), Expect(2) = 4e-12
Identities = 28/47 (59%), Positives = 35/47 (73%), Gaps = 1/47 (2%)
Frame = -3
Query: 266 LGLILRRQTNFLWPFKFKAPLSRLKK-RNHYVEGGNAGTRDNYVNVL 129
+G + NFLWPF+ KAPL LKK RNHYVEGG+AG R+N++N L
Sbjct: 191 VGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINEL 237
Score = 33.5 bits (75), Expect = 1.6
Identities = 14/17 (82%), Positives = 15/17 (87%)
Frame = -2
Query: 291 DRIHEIMTVRPHFKEAN 241
D IHEI+TV PHFKEAN
Sbjct: 183 DLIHEILTVGPHFKEAN 199
Score = 30.4 bits (67), Expect(2) = 4e-12
Identities = 11/20 (55%), Positives = 18/20 (90%)
Frame = -1
Query: 352 RTSLIDNSVIEEAIGKYGIM 293
R +L DNS++E+A+GK+GI+
Sbjct: 160 RIALTDNSIVEQALGKHGII 179
>ref|NP_671959.1| 60S ribosomal protein L7; protein id: At2g44120.2, supported by
cDNA: 36813. [Arabidopsis thaliana]
gi|6174958|sp|Q42208|RL7_ARATH 60S ribosomal protein L7
gi|7440720|pir||T00692 60S ribosomal protein L7
[imported] - Arabidopsis thaliana
gi|3212879|gb|AAC23430.1| 60S ribosomal protein L7
[Arabidopsis thaliana]
Length = 247
Score = 61.6 bits (148), Expect(2) = 1e-11
Identities = 28/47 (59%), Positives = 35/47 (73%), Gaps = 1/47 (2%)
Frame = -3
Query: 266 LGLILRRQTNFLWPFKFKAPLSRLKK-RNHYVEGGNAGTRDNYVNVL 129
+G + NFLWPF+ KAPL LKK RNHYVEGG+AG R+N++N L
Sbjct: 196 VGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINEL 242
Score = 34.7 bits (78), Expect = 0.72
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -2
Query: 291 DRIHEIMTVRPHFKEAN 241
D IHEIMTV PHFKEAN
Sbjct: 188 DLIHEIMTVGPHFKEAN 204
Score = 29.3 bits (64), Expect(2) = 1e-11
Identities = 10/20 (50%), Positives = 18/20 (90%)
Frame = -1
Query: 352 RTSLIDNSVIEEAIGKYGIM 293
R +L DNS++++A+GK+GI+
Sbjct: 165 RIALTDNSIVDQALGKHGII 184
>ref|NP_187967.1| ribosomal protein, putative; protein id: At3g13580.1, supported by
cDNA: gi_14532551, supported by cDNA: gi_15810195,
supported by cDNA: gi_18655394 [Arabidopsis thaliana]
gi|11994560|dbj|BAB02600.1| 60S ribosomal protein L7
[Arabidopsis thaliana] gi|14532552|gb|AAK64004.1|
AT3g13580/K20M4_2 [Arabidopsis thaliana]
gi|15810196|gb|AAL06999.1| AT3g13580/K20M4_2
[Arabidopsis thaliana] gi|18655395|gb|AAL76153.1|
AT3g13580/K20M4_2 [Arabidopsis thaliana]
Length = 244
Score = 60.8 bits (146), Expect(2) = 1e-11
Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Frame = -3
Query: 266 LGLILRRQTNFLWPFKFKAPLSRLKK-RNHYVEGGNAGTRDNYVNVL 129
+G + NFLWPF+ KAPL +KK RNHYVEGG+AG R+N++N L
Sbjct: 193 VGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINEL 239
Score = 34.7 bits (78), Expect = 0.72
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -2
Query: 291 DRIHEIMTVRPHFKEAN 241
D IHEIMTV PHFKEAN
Sbjct: 185 DLIHEIMTVGPHFKEAN 201
Score = 30.0 bits (66), Expect(2) = 1e-11
Identities = 10/20 (50%), Positives = 18/20 (90%)
Frame = -1
Query: 352 RTSLIDNSVIEEAIGKYGIM 293
RT+L DNS++++ +GK+GI+
Sbjct: 162 RTALTDNSIVDQGLGKHGII 181
>ref|NP_181940.2| 60S ribosomal protein L7; protein id: At2g44120.1, supported by
cDNA: gi_15450712, supported by cDNA: gi_17386141,
supported by cDNA: gi_17473919, supported by cDNA:
gi_20148290 [Arabidopsis thaliana]
gi|15450713|gb|AAK96628.1| At2g44120/F6E13.25
[Arabidopsis thaliana]
gi|17386142|gb|AAL38617.1|AF446884_1 At2g44120/F6E13.25
[Arabidopsis thaliana] gi|17473920|gb|AAL38372.1| 60S
ribosomal protein L7 [Arabidopsis thaliana]
gi|20148291|gb|AAM10036.1| 60S ribosomal protein L7
[Arabidopsis thaliana] gi|21593176|gb|AAM65125.1| 60S
ribosomal protein L7 [Arabidopsis thaliana]
Length = 242
Score = 61.6 bits (148), Expect(2) = 1e-11
Identities = 28/47 (59%), Positives = 35/47 (73%), Gaps = 1/47 (2%)
Frame = -3
Query: 266 LGLILRRQTNFLWPFKFKAPLSRLKK-RNHYVEGGNAGTRDNYVNVL 129
+G + NFLWPF+ KAPL LKK RNHYVEGG+AG R+N++N L
Sbjct: 191 VGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINEL 237
Score = 34.7 bits (78), Expect = 0.72
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -2
Query: 291 DRIHEIMTVRPHFKEAN 241
D IHEIMTV PHFKEAN
Sbjct: 183 DLIHEIMTVGPHFKEAN 199
Score = 29.3 bits (64), Expect(2) = 1e-11
Identities = 10/20 (50%), Positives = 18/20 (90%)
Frame = -1
Query: 352 RTSLIDNSVIEEAIGKYGIM 293
R +L DNS++++A+GK+GI+
Sbjct: 160 RIALTDNSIVDQALGKHGII 179
>prf||1909359B ribosomal protein L7
Length = 242
Score = 61.6 bits (148), Expect(2) = 2e-11
Identities = 28/47 (59%), Positives = 35/47 (73%), Gaps = 1/47 (2%)
Frame = -3
Query: 266 LGLILRRQTNFLWPFKFKAPLSRLKK-RNHYVEGGNAGTRDNYVNVL 129
+G + NFLWPF+ KAPL LKK RNHYVEGG+AG R+N++N L
Sbjct: 191 VGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINEL 237
Score = 32.7 bits (73), Expect = 2.7
Identities = 13/17 (76%), Positives = 15/17 (87%)
Frame = -2
Query: 291 DRIHEIMTVRPHFKEAN 241
D +HEI+TV PHFKEAN
Sbjct: 183 DLVHEIITVGPHFKEAN 199
Score = 28.1 bits (61), Expect(2) = 2e-11
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = -1
Query: 352 RTSLIDNSVIEEAIGKYGIM 293
R +L DN+V+E+ +GK+GI+
Sbjct: 160 RIALTDNAVVEQVLGKHGII 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,087,816
Number of Sequences: 1393205
Number of extensions: 8103382
Number of successful extensions: 13594
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 13220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13538
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
