Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017021A_C01 KMC017021A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_683385.1| similar to glycosyl hydrolase family 1; protein... 88 7e-17
pir||G86158 F22D16.15 protein - Arabidopsis thaliana gi|6056418|... 87 1e-16
ref|NP_563666.1| glycosyl hydrolase family 1; protein id: At1g02... 87 1e-16
ref|NP_176217.2| glycosyl hydrolase family 1; protein id: At1g60... 85 7e-16
pir||E96625 hypothetical protein T2K10.15 [imported] - Arabidops... 85 7e-16
>ref|NP_683385.1| similar to glycosyl hydrolase family 1; protein id: At1g45200.1
[Arabidopsis thaliana]
Length = 459
Score = 88.2 bits (217), Expect = 7e-17
Identities = 39/62 (62%), Positives = 48/62 (76%)
Frame = -2
Query: 539 RNGSNIKGYIAWSFMDVFELLDGYKSSFGLYYVDRDDPELKRYPKLSAKWYRQFLKDRST 360
RNGS+ +GY WSFMD++ELL+GYKSSFGLY V+ DP KR PKLSA WY FLK + T
Sbjct: 382 RNGSDTRGYFVWSFMDLYELLNGYKSSFGLYSVNFSDPHRKRSPKLSAHWYSGFLKGKPT 441
Query: 359 YI 354
++
Sbjct: 442 FL 443
>pir||G86158 F22D16.15 protein - Arabidopsis thaliana
gi|6056418|gb|AAF02882.1|AC009525_16 Similar to
beta-glucosidases [Arabidopsis thaliana]
Length = 497
Score = 87.0 bits (214), Expect = 1e-16
Identities = 39/65 (60%), Positives = 46/65 (70%)
Frame = -2
Query: 566 FFHVILNFVRNGSNIKGYIAWSFMDVFELLDGYKSSFGLYYVDRDDPELKRYPKLSAKWY 387
+ +L+ +R GS++KGY WS MDVFEL GY+ SFGL YVD DP LKR PKLSA WY
Sbjct: 418 YIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWY 477
Query: 386 RQFLK 372
FLK
Sbjct: 478 SSFLK 482
>ref|NP_563666.1| glycosyl hydrolase family 1; protein id: At1g02850.1, supported by
cDNA: gi_15146265, supported by cDNA: gi_17065373
[Arabidopsis thaliana] gi|15146266|gb|AAK83616.1|
At1g02850/F22D16_15 [Arabidopsis thaliana]
gi|17065374|gb|AAL32841.1| Similar to beta-glucosidases
[Arabidopsis thaliana] gi|24797032|gb|AAN64528.1|
At1g02850/F22D16_15 [Arabidopsis thaliana]
Length = 470
Score = 87.0 bits (214), Expect = 1e-16
Identities = 39/65 (60%), Positives = 46/65 (70%)
Frame = -2
Query: 566 FFHVILNFVRNGSNIKGYIAWSFMDVFELLDGYKSSFGLYYVDRDDPELKRYPKLSAKWY 387
+ +L+ +R GS++KGY WS MDVFEL GY+ SFGL YVD DP LKR PKLSA WY
Sbjct: 395 YIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWY 454
Query: 386 RQFLK 372
FLK
Sbjct: 455 SSFLK 459
>ref|NP_176217.2| glycosyl hydrolase family 1; protein id: At1g60090.1 [Arabidopsis
thaliana]
Length = 512
Score = 84.7 bits (208), Expect = 7e-16
Identities = 37/67 (55%), Positives = 47/67 (69%)
Frame = -2
Query: 554 ILNFVRNGSNIKGYIAWSFMDVFELLDGYKSSFGLYYVDRDDPELKRYPKLSAKWYRQFL 375
+L +RNGS+ +GY WSFMD++ELL GY+ FGLY V+ DP KR PKLSA WY FL
Sbjct: 430 VLKSIRNGSDTRGYFVWSFMDLYELLGGYEVGFGLYTVNFSDPHRKRSPKLSAYWYSDFL 489
Query: 374 KDRSTYI 354
K S ++
Sbjct: 490 KGESAFL 496
>pir||E96625 hypothetical protein T2K10.15 [imported] - Arabidopsis thaliana
gi|4249391|gb|AAD14488.1|AAD14488 Similar to gi|3249076
T13D8.16 beta glucosidase from Arabidopsis thaliana BAC
gb|AC004473
Length = 528
Score = 84.7 bits (208), Expect = 7e-16
Identities = 37/67 (55%), Positives = 47/67 (69%)
Frame = -2
Query: 554 ILNFVRNGSNIKGYIAWSFMDVFELLDGYKSSFGLYYVDRDDPELKRYPKLSAKWYRQFL 375
+L +RNGS+ +GY WSFMD++ELL GY+ FGLY V+ DP KR PKLSA WY FL
Sbjct: 446 VLKSIRNGSDTRGYFVWSFMDLYELLGGYEVGFGLYTVNFSDPHRKRSPKLSAYWYSDFL 505
Query: 374 KDRSTYI 354
K S ++
Sbjct: 506 KGESAFL 512
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,569,154
Number of Sequences: 1393205
Number of extensions: 9535851
Number of successful extensions: 22906
Number of sequences better than 10.0: 478
Number of HSP's better than 10.0 without gapping: 22183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22739
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
