Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017013A_C01 KMC017013A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201004.1| GCN4-complementing protein - like; protein id: ... 155 3e-37
ref|NP_196834.1| putative protein; protein id: At5g13300.1 [Arab... 144 4e-34
emb|CAB61505.1| GCN4-complementing protein (GCP1) [Arabidopsis t... 97 8e-20
gb|AAG51644.1|AC018908_10 putative GCN4-complementing protein, 3... 97 8e-20
ref|NP_176283.1| GCN4-complementing protein, putative; protein i... 97 8e-20
>ref|NP_201004.1| GCN4-complementing protein - like; protein id: At5g61980.1
[Arabidopsis thaliana]
Length = 850
Score = 155 bits (391), Expect = 3e-37
Identities = 73/90 (81%), Positives = 80/90 (88%)
Frame = +3
Query: 231 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASSLET 410
M FAKLDDSPMFR+Q+Q MEESAE LR R L+FYKGCRKYTEGLGE YD DI F ++LE+
Sbjct: 1 MHFAKLDDSPMFRQQMQSMEESAELLRLRCLRFYKGCRKYTEGLGEGYDADIGFVNALES 60
Query: 411 FGGGHNDPISVAFGGPVMTKFTIALREIGT 500
FGGGHNDP+ VAFGGPVMTKFTIALREIGT
Sbjct: 61 FGGGHNDPVCVAFGGPVMTKFTIALREIGT 90
>ref|NP_196834.1| putative protein; protein id: At5g13300.1 [Arabidopsis thaliana]
gi|11358303|pir||T48577 hypothetical protein T31B5.120 -
Arabidopsis thaliana gi|7529285|emb|CAB86637.1| putative
protein [Arabidopsis thaliana]
Length = 750
Score = 144 bits (364), Expect = 4e-34
Identities = 70/72 (97%), Positives = 71/72 (98%)
Frame = +3
Query: 285 MEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASSLETFGGGHNDPISVAFGGPVM 464
MEESAE LRERSLKFYKGCRKYTEGLGEAYDGDIAFAS+LETFGGGHNDPISVAFGGPVM
Sbjct: 1 MEESAEILRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVM 60
Query: 465 TKFTIALREIGT 500
TKFTIALREIGT
Sbjct: 61 TKFTIALREIGT 72
>emb|CAB61505.1| GCN4-complementing protein (GCP1) [Arabidopsis thaliana]
Length = 775
Score = 97.4 bits (241), Expect = 8e-20
Identities = 46/88 (52%), Positives = 65/88 (73%)
Frame = +3
Query: 237 FAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASSLETFG 416
F L+DSPMF+KQ+ +E +A+ L++R K YKG +K+ LGEA G+ AFA+ LE FG
Sbjct: 4 FINLEDSPMFQKQVCSLEGTADELKDRCQKLYKGVKKFMGTLGEASKGESAFAACLEEFG 63
Query: 417 GGHNDPISVAFGGPVMTKFTIALREIGT 500
GG +DPIS++ GGPV++KF ALRE+ +
Sbjct: 64 GGPDDPISLSIGGPVISKFINALRELAS 91
>gb|AAG51644.1|AC018908_10 putative GCN4-complementing protein, 3'partial; 2724-1 [Arabidopsis
thaliana]
Length = 205
Score = 97.4 bits (241), Expect = 8e-20
Identities = 45/88 (51%), Positives = 63/88 (71%)
Frame = +3
Query: 237 FAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASSLETFG 416
F L+DSPMF+KQ+ +E +++ L++R K YKG +K+ LGEA G AFA SLE FG
Sbjct: 4 FINLEDSPMFQKQVFSLEGTSDELKDRCQKLYKGVKKFMGALGEASTGVSAFADSLEEFG 63
Query: 417 GGHNDPISVAFGGPVMTKFTIALREIGT 500
GH+DP+SV+ GGPV++KF LRE+ +
Sbjct: 64 AGHDDPVSVSIGGPVISKFINTLRELSS 91
>ref|NP_176283.1| GCN4-complementing protein, putative; protein id: At1g60860.1
[Arabidopsis thaliana] gi|25404294|pir||A96634 probable
GCN4-complementing protein F23C21.2 [imported] -
Arabidopsis thaliana
gi|12323799|gb|AAG51867.1|AC079675_2 GCN4-complementing
protein, putative; 3111-9506 [Arabidopsis thaliana]
Length = 776
Score = 97.4 bits (241), Expect = 8e-20
Identities = 45/88 (51%), Positives = 63/88 (71%)
Frame = +3
Query: 237 FAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASSLETFG 416
F L+DSPMF+KQ+ +E +++ L++R K YKG +K+ LGEA G AFA SLE FG
Sbjct: 4 FINLEDSPMFQKQVFSLEGTSDELKDRCQKLYKGVKKFMGALGEASTGVSAFADSLEEFG 63
Query: 417 GGHNDPISVAFGGPVMTKFTIALREIGT 500
GH+DP+SV+ GGPV++KF LRE+ +
Sbjct: 64 AGHDDPVSVSIGGPVISKFINTLRELSS 91
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,652,864
Number of Sequences: 1393205
Number of extensions: 8643107
Number of successful extensions: 29517
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 27877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29465
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
