Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017003A_C01 KMC017003A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196699.1| 1-D-deoxyxylulose 5-phosphate synthase - like p... 146 1e-34
emb|CAD22530.1| 1-deoxy-D-xylulose 5-phosphate synthase 1 [Medic... 130 6e-30
gb|AAD38941.1|AF143812_1 1-D-deoxyxylulose 5-phosphate synthase ... 129 1e-29
dbj|BAB02345.1| 1-deoxyxylulose-5-phosphate synthase; transketol... 129 2e-29
pir||T09543 deoxyxylulose synthase (EC 2.2.1.-) TKT2 precursor, ... 128 4e-29
>ref|NP_196699.1| 1-D-deoxyxylulose 5-phosphate synthase - like protein; protein id:
At5g11380.1 [Arabidopsis thaliana]
gi|8953400|emb|CAB96673.1| 1-D-deoxyxylulose 5-phosphate
synthase-like protein [Arabidopsis thaliana]
Length = 700
Score = 146 bits (369), Expect = 1e-34
Identities = 74/91 (81%), Positives = 77/91 (84%)
Frame = -1
Query: 504 KLLSHLCKHHSFLITVEEGSVGGFGSHVAQFIALDGLLDRGIKWRPIVLPDRYIEHASPN 325
KL+ LC++H FLITVEEG VGGFGSHVAQFIALDG LD IKWRPIVLPD YIE ASP
Sbjct: 609 KLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPR 668
Query: 324 EQLDQAGLTGHHIAATALSLLGRTREALQFM 232
EQL AGLTGHHIAATALSLLGRTREAL M
Sbjct: 669 EQLALAGLTGHHIAATALSLLGRTREALLLM 699
>emb|CAD22530.1| 1-deoxy-D-xylulose 5-phosphate synthase 1 [Medicago truncatula]
Length = 717
Score = 130 bits (328), Expect = 6e-30
Identities = 62/90 (68%), Positives = 73/90 (80%)
Frame = -1
Query: 501 LLSHLCKHHSFLITVEEGSVGGFGSHVAQFIALDGLLDRGIKWRPIVLPDRYIEHASPNE 322
L+ L K H LITVEEGS+GGFGSHVAQF+ALDGLLD +KWRP+VLPDRYI+H SP +
Sbjct: 627 LIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGNLKWRPVVLPDRYIDHGSPAD 686
Query: 321 QLDQAGLTGHHIAATALSLLGRTREALQFM 232
QL AGLT HIAAT ++LG+TREAL+ M
Sbjct: 687 QLCMAGLTPSHIAATVFNILGQTREALEVM 716
>gb|AAD38941.1|AF143812_1 1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon esculentum]
Length = 719
Score = 129 bits (325), Expect = 1e-29
Identities = 62/90 (68%), Positives = 73/90 (80%)
Frame = -1
Query: 501 LLSHLCKHHSFLITVEEGSVGGFGSHVAQFIALDGLLDRGIKWRPIVLPDRYIEHASPNE 322
L+ L K H LITVEEGS+GGFGSHV QF+ALDGLLD +KWRPIVLPDRYI+H SP +
Sbjct: 629 LIRSLAKSHEVLITVEEGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPVD 688
Query: 321 QLDQAGLTGHHIAATALSLLGRTREALQFM 232
QL +AGLT HIAAT ++LG+TREAL+ M
Sbjct: 689 QLAEAGLTPSHIAATVFNILGQTREALEVM 718
>dbj|BAB02345.1| 1-deoxyxylulose-5-phosphate synthase; transketolase [Arabidopsis
thaliana]
Length = 604
Score = 129 bits (323), Expect = 2e-29
Identities = 62/87 (71%), Positives = 71/87 (81%)
Frame = -1
Query: 501 LLSHLCKHHSFLITVEEGSVGGFGSHVAQFIALDGLLDRGIKWRPIVLPDRYIEHASPNE 322
L+ L K H LITVEEGS+GGFGSHV QF+ALDGLLD +KWRP+VLPDRYIEH SP +
Sbjct: 515 LIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIEHGSPMD 574
Query: 321 QLDQAGLTGHHIAATALSLLGRTREAL 241
QL +AGLT HIAATAL+L+G REAL
Sbjct: 575 QLAEAGLTASHIAATALNLMGTPREAL 601
>pir||T09543 deoxyxylulose synthase (EC 2.2.1.-) TKT2 precursor, chloroplast
[validated] - pepper gi|3559816|emb|CAA75778.1|
transketolase 2 [Capsicum annuum]
Length = 719
Score = 128 bits (321), Expect = 4e-29
Identities = 60/90 (66%), Positives = 73/90 (80%)
Frame = -1
Query: 501 LLSHLCKHHSFLITVEEGSVGGFGSHVAQFIALDGLLDRGIKWRPIVLPDRYIEHASPNE 322
L+ L K H L+TVE+GS+GGFGSHV QF+ALDGLLD +KWRPIVLPDRYI+H SP +
Sbjct: 629 LIRSLAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPAD 688
Query: 321 QLDQAGLTGHHIAATALSLLGRTREALQFM 232
QL +AGLT HIAAT ++LG+TREAL+ M
Sbjct: 689 QLAEAGLTPSHIAATVFNILGQTREALEVM 718
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,869,036
Number of Sequences: 1393205
Number of extensions: 8886003
Number of successful extensions: 21120
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 20574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21086
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
