Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016991A_C01 KMC016991A_c01
(659 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_358871.1| Hypothetical protein [Streptococcus pneumoniae ... 33 4.4
ref|NP_068828.1| orf1 [European brown hare syndrome virus] gi|15... 32 5.8
gb|AAF69514.2|AF258618_1 polyprotein [Rabbit hemorrhagic disease... 32 7.5
gb|AAG16239.1|AF295785_1 polyprotein [Rabbit hemorrhagic disease... 32 9.8
ref|NP_345879.1| hypothetical protein [Streptococcus pneumoniae ... 32 9.8
>ref|NP_358871.1| Hypothetical protein [Streptococcus pneumoniae R6]
gi|25379730|pir||E98031 hypothetical protein spr1278
[imported] - Streptococcus pneumoniae (strain R6)
gi|15458919|gb|AAL00082.1| Hypothetical protein
[Streptococcus pneumoniae R6]
Length = 162
Score = 32.7 bits (73), Expect = 4.4
Identities = 16/60 (26%), Positives = 29/60 (47%)
Frame = -2
Query: 217 FD*RMFLFLVIXGFFFFFKWILFLGILDS*ACAAVLVHATMLHFSVIACQLHEICVTVLL 38
F+ M L ++I G F+FF +LG+ + + HF+++ C + +T LL
Sbjct: 48 FNSNMLLIVIIIGTFYFFNRARYLGV----------TYYSRFHFTILGCFFLTLAITALL 97
>ref|NP_068828.1| orf1 [European brown hare syndrome virus]
gi|1550751|emb|CAA93445.1| orf1 [European brown hare
syndrome virus]
Length = 2334
Score = 32.3 bits (72), Expect = 5.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 378 EQSIPEGKSYGCAVIVSSDLRRVLGVVKSFRLFGTFMKGIQK*VT 244
E S+P G + GC + +S ++G + + + TFMKG K T
Sbjct: 362 EDSVPTGPTAGCLIFMSFVFSVIVGYLPNNSVISTFMKGAGKLTT 406
>gb|AAF69514.2|AF258618_1 polyprotein [Rabbit hemorrhagic disease virus]
Length = 2344
Score = 32.0 bits (71), Expect = 7.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 378 EQSIPEGKSYGCAVIVSSDLRRVLGVVKSFRLFGTFMKGIQK*VT 244
E S+P G + GC + ++ V+G + + + TFMKG K T
Sbjct: 367 EDSVPTGPTAGCLIFMAFVFSTVVGYLPNNNVITTFMKGAGKLTT 411
>gb|AAG16239.1|AF295785_1 polyprotein [Rabbit hemorrhagic disease virus]
Length = 2322
Score = 31.6 bits (70), Expect = 9.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 378 EQSIPEGKSYGCAVIVSSDLRRVLGVVKSFRLFGTFMKGIQK*VT 244
E S+P G + GC + ++ V+G + + + TFMKG K T
Sbjct: 345 EDSVPTGPTAGCLIFMAFVFSTVVGYLPNNSVITTFMKGAGKLTT 389
>ref|NP_345879.1| hypothetical protein [Streptococcus pneumoniae TIGR4]
gi|25379728|pir||F95165 hypothetical protein SP1422
[imported] - Streptococcus pneumoniae (strain TIGR4)
gi|14972911|gb|AAK75519.1| hypothetical protein
[Streptococcus pneumoniae TIGR4]
Length = 162
Score = 31.6 bits (70), Expect = 9.8
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -2
Query: 217 FD*RMFLFLVIXGFFFFFKWILFLGILDS*ACAAVLVHATMLHFSVIACQLHEICVTVLL 38
F+ M L ++I G F+FF +LG+ + HF+++ C + +T LL
Sbjct: 48 FNSNMLLIVIIIGTFYFFNRARYLGV----------TYYGRFHFTILGCFFLTLAITALL 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,848,551
Number of Sequences: 1393205
Number of extensions: 10168215
Number of successful extensions: 21127
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21102
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
