Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016977A_C01 KMC016977A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196090.1| putative protein; protein id: At5g04700.1 [Arab... 104 6e-22
ref|NP_188497.1| hypothetical protein; protein id: At3g18670.1 [... 99 2e-20
dbj|BAB01793.1| emb|CAB70981.1~gene_id:MVE11.3~similar to unknow... 99 2e-20
ref|NP_196088.1| putative protein; protein id: At5g04680.1 [Arab... 96 2e-19
ref|NP_196089.1| putative protein; protein id: At5g04690.1 [Arab... 96 3e-19
>ref|NP_196090.1| putative protein; protein id: At5g04700.1 [Arabidopsis thaliana]
gi|11282312|pir||T48466 hypothetical protein T1E3.60 -
Arabidopsis thaliana gi|7413532|emb|CAB86012.1| putative
protein [Arabidopsis thaliana]
gi|9758445|dbj|BAB08974.1| gene_id:MUK11.2~unknown
protein [Arabidopsis thaliana]
Length = 669
Score = 104 bits (260), Expect = 6e-22
Identities = 53/119 (44%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Frame = -3
Query: 517 FLVFIVSDALALCSSMASLLMFLAILNAPYAEEDFLNALPHRLIIGLASLFFAIVTTMIA 338
F++FIVSD ++ +S S+L+FL IL A Y+ +DFL LP ++I GL+ LF +I +IA
Sbjct: 550 FIIFIVSDLISCFASCTSVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIA 609
Query: 337 FSAALSLLLQERLKWVPIPIVLLACVPITLFARLQLPLFIQMIISTYGSPIY-HHQRLW 164
FS+AL ++ + KW+ P +L AC+P LF LQ PL +MI STYG I+ + + W
Sbjct: 610 FSSALFTMMGKEGKWIVAPTILFACLPALLFVLLQYPLLKEMIFSTYGKGIFDRNMKCW 668
>ref|NP_188497.1| hypothetical protein; protein id: At3g18670.1 [Arabidopsis
thaliana]
Length = 598
Score = 99.4 bits (246), Expect = 2e-20
Identities = 46/116 (39%), Positives = 75/116 (64%)
Frame = -3
Query: 517 FLVFIVSDALALCSSMASLLMFLAILNAPYAEEDFLNALPHRLIIGLASLFFAIVTTMIA 338
F +F++SDA++L +S SLLMFL IL + Y EEDFL +LP +LI+GL +LF ++ T ++
Sbjct: 478 FKIFLISDAISLFTSCMSLLMFLGILKSRYREEDFLRSLPTKLIVGLLALFLSMATMIVT 537
Query: 337 FSAALSLLLQERLKWVPIPIVLLACVPITLFARLQLPLFIQMIISTYGSPIYHHQR 170
F L L+ E++ WV + LA +P+ +F LQ P+ +++ +TY ++ R
Sbjct: 538 FVVTLMTLVGEKISWVSAQFMFLAVIPLGMFVVLQFPVLLEIFRATYCPNVFDKPR 593
>dbj|BAB01793.1| emb|CAB70981.1~gene_id:MVE11.3~similar to unknown protein
[Arabidopsis thaliana]
Length = 653
Score = 99.4 bits (246), Expect = 2e-20
Identities = 46/116 (39%), Positives = 75/116 (64%)
Frame = -3
Query: 517 FLVFIVSDALALCSSMASLLMFLAILNAPYAEEDFLNALPHRLIIGLASLFFAIVTTMIA 338
F +F++SDA++L +S SLLMFL IL + Y EEDFL +LP +LI+GL +LF ++ T ++
Sbjct: 533 FKIFLISDAISLFTSCMSLLMFLGILKSRYREEDFLRSLPTKLIVGLLALFLSMATMIVT 592
Query: 337 FSAALSLLLQERLKWVPIPIVLLACVPITLFARLQLPLFIQMIISTYGSPIYHHQR 170
F L L+ E++ WV + LA +P+ +F LQ P+ +++ +TY ++ R
Sbjct: 593 FVVTLMTLVGEKISWVSAQFMFLAVIPLGMFVVLQFPVLLEIFRATYCPNVFDKPR 648
>ref|NP_196088.1| putative protein; protein id: At5g04680.1 [Arabidopsis thaliana]
gi|11358104|pir||T48464 hypothetical protein T1E3.40 -
Arabidopsis thaliana gi|7413530|emb|CAB86010.1| putative
protein [Arabidopsis thaliana]
Length = 705
Score = 96.3 bits (238), Expect = 2e-19
Identities = 49/112 (43%), Positives = 73/112 (64%)
Frame = -3
Query: 517 FLVFIVSDALALCSSMASLLMFLAILNAPYAEEDFLNALPHRLIIGLASLFFAIVTTMIA 338
F++FIVSD ++ ++ ++ +FL IL A Y+ +DFL ALP ++I GL+ LF +I +IA
Sbjct: 587 FIIFIVSDLISCFAACTAVPIFLGILTARYSFDDFLVALPTKMITGLSILFVSIAAMLIA 646
Query: 337 FSAALSLLLQERLKWVPIPIVLLACVPITLFARLQLPLFIQMIISTYGSPIY 182
FS L + + + KW+ P +L AC+P LF LQ PL +MI STYG I+
Sbjct: 647 FSLVL-ITMMNKGKWIVAPTILCACLPALLFVLLQYPLLKEMIFSTYGKGIF 697
>ref|NP_196089.1| putative protein; protein id: At5g04690.1 [Arabidopsis thaliana]
gi|11282311|pir||T48465 hypothetical protein T1E3.50 -
Arabidopsis thaliana gi|7413531|emb|CAB86011.1| putative
protein [Arabidopsis thaliana]
Length = 625
Score = 95.9 bits (237), Expect = 3e-19
Identities = 47/112 (41%), Positives = 72/112 (63%)
Frame = -3
Query: 517 FLVFIVSDALALCSSMASLLMFLAILNAPYAEEDFLNALPHRLIIGLASLFFAIVTTMIA 338
F++FIVSD ++ ++ S+L+FL IL A YA +DFL +LP +I GL++LF +I ++A
Sbjct: 508 FVIFIVSDLISCFAACTSVLIFLGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAMLVA 567
Query: 337 FSAALSLLLQERLKWVPIPIVLLACVPITLFARLQLPLFIQMIISTYGSPIY 182
FS+AL + + W+ P + AC P LF +Q PL ++I STYG I+
Sbjct: 568 FSSALFTIFND--PWIVAPTIFFACFPALLFVMIQYPLLKELIFSTYGKRIF 617
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,748,922
Number of Sequences: 1393205
Number of extensions: 9502452
Number of successful extensions: 25034
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 24370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25019
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
