Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016952A_C01 KMC016952A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB52583.1| expanded [Drosophila grimshawi] 34 1.3
ref|NP_621947.1| Na+-driven multidrug efflux pump [Thermoanaerob... 33 1.7
ref|NP_704864.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.9
gb|EAA21412.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.9
ref|NP_700609.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.8
>gb|AAB52583.1| expanded [Drosophila grimshawi]
Length = 247
Score = 33.9 bits (76), Expect = 1.3
Identities = 24/81 (29%), Positives = 36/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 92 LLNSKQKQKLKKQKKLKDPSQAPYYNTKKSSPEKIPSNIELLLPAS**SSPG-SL*KKIK 268
+LNS + K K+L P PY N K P +PS +P+ +P S+ K
Sbjct: 73 ILNSLDSMPMPKVKRLPPPPPPPYVNRLKKPPMPVPSEQPPPIPSKPNPNPSLSILPPRK 132
Query: 269 MLVYN*H*QNTYVFPSYSAAR 331
L N H N+ + + S A+
Sbjct: 133 PLTLNPHQSNSPLIKTSSGAQ 153
>ref|NP_621947.1| Na+-driven multidrug efflux pump [Thermoanaerobacter tengcongensis]
gi|20515236|gb|AAM23551.1| Na+-driven multidrug efflux
pump [Thermoanaerobacter tengcongensis]
Length = 456
Score = 33.5 bits (75), Expect = 1.7
Identities = 15/43 (34%), Positives = 22/43 (50%)
Frame = -2
Query: 207 ILEGIFSGEDFFVL*YGAWLGSFNFFCFFNFCFCFELRRGSWK 79
I+ G F ++F + YG W+G F F + + F R G WK
Sbjct: 410 IVLGSFLAKNFGMDIYGIWIGVFTDFIVRSIMYIFRFRAGKWK 452
>ref|NP_704864.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505227|emb|CAD52007.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 792
Score = 32.7 bits (73), Expect = 2.9
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +3
Query: 96 STQNKNKN*KNKKN*RIQAKPHTTIQKNPHQKRFPPILNFYYQLHDDHHLDPYKKKLKCL 275
S N N N NKK + K T +N RF ++YY +++H K K+ +
Sbjct: 150 SNNNNNNNNNNKKKKNKKEKEKET--ENHFNHRFYKYQDYYYYYYNNHIKKKKKDKINDI 207
Query: 276 YTINISKIPT 305
Y + KI T
Sbjct: 208 YLLKKKKIYT 217
>gb|EAA21412.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1688
Score = 32.7 bits (73), Expect = 2.9
Identities = 23/67 (34%), Positives = 31/67 (45%), Gaps = 3/67 (4%)
Frame = +3
Query: 96 STQNKNKN*KNKKN*RIQAKPHTTIQK---NPHQKRFPPILNFYYQLHDDHHLDPYKKKL 266
+++NKN N KNK N ++ + I K PH F + N YY D H + KK
Sbjct: 1522 NSKNKNNNKKNKMNQQVMNLNNNDIAKGHMEPHYGHF--VQNSYYNFRDFHGMQNASKK- 1578
Query: 267 KCLYTIN 287
Y IN
Sbjct: 1579 --FYHIN 1583
>ref|NP_700609.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495000|gb|AAN35333.1|AE014831_9 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 491
Score = 32.3 bits (72), Expect = 3.8
Identities = 17/54 (31%), Positives = 25/54 (45%)
Frame = +3
Query: 102 QNKNKN*KNKKN*RIQAKPHTTIQKNPHQKRFPPILNFYYQLHDDHHLDPYKKK 263
+ KNK NKKN KPH KN H ++ H+++H YK++
Sbjct: 239 KEKNKEKNNKKNNNKNIKPHEDHHKNDHD----------HEHHEENHKQKYKEE 282
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,163,028
Number of Sequences: 1393205
Number of extensions: 9112812
Number of successful extensions: 25271
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 24131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25204
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
