Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016948A_C01 KMC016948A_c01
(460 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_003463.1| DEK oncogene (DNA binding); DEK gene [Homo sapi... 39 0.020
ref|XP_225209.1| similar to DEK oncogene (DNA binding); DEK gene... 39 0.033
dbj|BAC28296.1| unnamed protein product [Mus musculus] 37 0.097
ref|NP_703459.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.097
ref|XP_127322.1| RIKEN cDNA 1810019E15 [Mus musculus] gi|2361987... 37 0.097
>ref|NP_003463.1| DEK oncogene (DNA binding); DEK gene [Homo sapiens]
gi|544150|sp|P35659|DEK_HUMAN DEK protein
gi|284375|pir||S26059 probable transforming protein
(dek) - human gi|30503|emb|CAA45536.1| putative oncogene
[Homo sapiens] gi|23273866|gb|AAH35259.1| DEK oncogene
(DNA binding) [Homo sapiens]
Length = 375
Score = 39.3 bits (90), Expect = 0.020
Identities = 27/80 (33%), Positives = 44/80 (54%), Gaps = 10/80 (12%)
Frame = -1
Query: 376 RETPKKEKPKNK---------KNAQIGGDDDNSRRKSKRSRRVES-GDDITSNPASQKTL 227
++T K+EKPK K K+A + D ++ +K++ S + ES +D + + K L
Sbjct: 257 KKTAKREKPKQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKESESEDSSDDEPLIKKL 316
Query: 226 KKRPRDGDVSEVFVKKLKAS 167
KK P D ++ E +KKL AS
Sbjct: 317 KKPPTDEELKET-IKKLLAS 335
>ref|XP_225209.1| similar to DEK oncogene (DNA binding); DEK gene [Homo sapiens]
[Rattus norvegicus]
Length = 491
Score = 38.5 bits (88), Expect = 0.033
Identities = 28/79 (35%), Positives = 43/79 (53%), Gaps = 10/79 (12%)
Frame = -1
Query: 376 RETPKKEKPKNK---------KNAQIGGDDDNSRRKSKRSRRVESG-DDITSNPASQKTL 227
++T KKEK K K K+A + D ++ +K++ S + ESG +D + + K L
Sbjct: 373 KKTSKKEKAKQKATTKSKKSVKSANVKKADSSTTKKNQNSSKKESGSEDSSDDEPLIKKL 432
Query: 226 KKRPRDGDVSEVFVKKLKA 170
KK P D ++ E VKKL A
Sbjct: 433 KKPPTDEELKET-VKKLLA 450
>dbj|BAC28296.1| unnamed protein product [Mus musculus]
Length = 380
Score = 37.0 bits (84), Expect = 0.097
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Frame = -1
Query: 376 RETPKKEKPKNK---------KNAQIGGDDDNSRRKSKRSRRVES-GDDITSNPASQKTL 227
++T KKEK K K K+A + D ++ +K+++S + ES +D + + K L
Sbjct: 262 KKTSKKEKAKQKATAKSKKSVKSANVKKADSSTTKKNQKSSKKESESEDSSDDEPLIKKL 321
Query: 226 KKRPRDGDVSEVFVKKLKA 170
KK P D ++ E VKKL A
Sbjct: 322 KKPPTDEELKET-VKKLLA 339
>ref|NP_703459.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504600|emb|CAD51479.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 10061
Score = 37.0 bits (84), Expect = 0.097
Identities = 18/48 (37%), Positives = 28/48 (57%), Gaps = 1/48 (2%)
Frame = -1
Query: 364 KKEKPKNKKNAQIGGD-DDNSRRKSKRSRRVESGDDITSNPASQKTLK 224
KK+K K K N I D DDN++ K K +++ DDI +N S+ ++
Sbjct: 5982 KKKKNKKKDNKNINDDSDDNNKNKKKLKNNIKNSDDIINNYFSKNVIE 6029
>ref|XP_127322.1| RIKEN cDNA 1810019E15 [Mus musculus] gi|23619872|ref|XP_181366.1|
RIKEN cDNA 1810019E15 [Mus musculus]
Length = 380
Score = 37.0 bits (84), Expect = 0.097
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Frame = -1
Query: 376 RETPKKEKPKNK---------KNAQIGGDDDNSRRKSKRSRRVES-GDDITSNPASQKTL 227
++T KKEK K K K+A + D ++ +K+++S + ES +D + + K L
Sbjct: 262 KKTSKKEKAKQKATAKSKKSVKSANVKKADSSTTKKNQKSSKKESESEDSSDDEPLIKKL 321
Query: 226 KKRPRDGDVSEVFVKKLKA 170
KK P D ++ E VKKL A
Sbjct: 322 KKPPTDEELKET-VKKLLA 339
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,282,074
Number of Sequences: 1393205
Number of extensions: 7859938
Number of successful extensions: 24869
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 23498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24711
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
