Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016917A_C01 KMC016917A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11089.1| contains similarity to unknown protein~gb|AAF636... 33 1.6
ref|NP_652747.1| NADH dehydrogenase subunit 1 [Tigriopus japonic... 33 2.1
gb|EAA16797.1| hypothetical protein [Plasmodium yoelii yoelii] 32 4.7
ref|NP_811686.1| putative adenylate cyclase [Bacteroides thetaio... 31 6.1
gb|EAA22342.1| molybdopterin biosynthesis protein MoeB [Plasmodi... 31 6.1
>dbj|BAB11089.1| contains similarity to unknown
protein~gb|AAF63638.1~gene_id:MPL12.14 [Arabidopsis
thaliana]
Length = 436
Score = 33.1 bits (74), Expect = 1.6
Identities = 27/102 (26%), Positives = 44/102 (42%), Gaps = 4/102 (3%)
Frame = +1
Query: 175 WIYKLRLYFLCWILYKDLLYPQSHKIPYCFFKTMNRFSQELESKTDVKRLKAKRTV*EIT 354
W ++ L WI+ ++Y H T+ R+ ++LE KRL K + IT
Sbjct: 335 WHFRSGLDRYIWII--GMIYAYYHP-------TVERWMEKLEDCETKKRLSIKAAIVTIT 385
Query: 355 ML----WFSCYSFYIPTSFLIYEDSLCKISFTAFTSHLFLVL 468
+L W+ C TS+ +Y I T+ LFL++
Sbjct: 386 VLVGYVWYECIYKLDRTSYNMYHPYTSWIPITSVHKTLFLLV 427
>ref|NP_652747.1| NADH dehydrogenase subunit 1 [Tigriopus japonicus]
gi|21320909|dbj|BAB97218.1| NADH dehydrogenase subunit 2
[Tigriopus japonicus]
Length = 321
Score = 32.7 bits (73), Expect = 2.1
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -3
Query: 139 GILIGLSCN*HFEFWVFIELII*GIIAYMTL 47
GIL G+S F+FWVF+EL + G + Y +L
Sbjct: 17 GILGGVSSVDFFQFWVFLELNLLGFVVYASL 47
>gb|EAA16797.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 665
Score = 31.6 bits (70), Expect = 4.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 148 CIKTNSC*NWIYKLRLYFLCWILYKDLLYPQSHKIPYCFF 267
C + N+I K + CW+ KDL S+ I YC+F
Sbjct: 486 CCNDDIVENFIIKKNMKMPCWVKIKDLKNNFSNNIAYCYF 525
>ref|NP_811686.1| putative adenylate cyclase [Bacteroides thetaiotaomicron VPI-5482]
gi|29340086|gb|AAO77880.1| putative adenylate cyclase
[Bacteroides thetaiotaomicron VPI-5482]
Length = 493
Score = 31.2 bits (69), Expect = 6.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 368 LNQSIVISHTVLFAFNLLTSVLLSSSWENLFMVLKKQYGILWLWG 234
+N + + SH ++ +L S WEN+F + + G LW WG
Sbjct: 149 VNGNRISSHVLVKGDVVLISKKYPLQWENIFALTPPKGGYLWQWG 193
>gb|EAA22342.1| molybdopterin biosynthesis protein MoeB [Plasmodium yoelii yoelii]
Length = 517
Score = 31.2 bits (69), Expect = 6.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 172 NWIYKLRLYFLCWILYKDLLYPQSHKIPYCFFKTMNRFS 288
NWI + ++Y + KD+LY + KI FF+ +N+++
Sbjct: 28 NWIERKQIYMDFYNKIKDILYEKGEKIFPYFFRFLNKYN 66
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,168,457
Number of Sequences: 1393205
Number of extensions: 7035225
Number of successful extensions: 13987
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13985
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
