Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016903A_C01 KMC016903A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195678.1| hypothetical protein; protein id: At4g39680.1 [... 104 7e-22
dbj|BAC07066.1| contains EST AU062819(C50596)~similar to Arabido... 104 1e-21
ref|NP_647904.1| CG11345-PA [Drosophila melanogaster] gi|7292501... 58 1e-07
ref|NP_176434.1| hypothetical protein; protein id: At1g62440.1 [... 54 1e-06
pir||T01456 extensin homolog F24O1.18 - Arabidopsis thaliana gi|... 54 1e-06
>ref|NP_195678.1| hypothetical protein; protein id: At4g39680.1 [Arabidopsis
thaliana] gi|7487219|pir||T05005 hypothetical protein
T19P19.70 - Arabidopsis thaliana
gi|3080437|emb|CAA18754.1| putative protein [Arabidopsis
thaliana] gi|7270952|emb|CAB80631.1| putative protein
[Arabidopsis thaliana]
Length = 633
Score = 104 bits (260), Expect = 7e-22
Identities = 65/123 (52%), Positives = 75/123 (60%), Gaps = 4/123 (3%)
Frame = -2
Query: 588 LVAEYVDPQEVKMKLEPTPAVVIPVSNDLTAHPATPSSKPEPPPLQHSEEPSFPAMLLPP 409
L+AE+V +EVK KLE P+ P P +P+ L P LPP
Sbjct: 525 LIAEFVRAEEVKEKLEA------PL-------PPQPQHQPQAQTLSRP-----PPTALPP 566
Query: 408 PPPLSKLPPAARERLPPPPPP----EKVDRPIVTLDDLFRKTSAAPRIYYLPLSEEQVAA 241
PPPL+K PP ERLP PPPP E+ + PIVTLDDLF+KT A PRIYYLPLSEEQVAA
Sbjct: 567 PPPLAK-PPHVVERLPLPPPPPIAPEEQEPPIVTLDDLFKKTKAIPRIYYLPLSEEQVAA 625
Query: 240 KLA 232
KLA
Sbjct: 626 KLA 628
>dbj|BAC07066.1| contains EST AU062819(C50596)~similar to Arabidopsis thaliana
chromosome4, At4g39680~unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 938
Score = 104 bits (259), Expect = 1e-21
Identities = 65/128 (50%), Positives = 80/128 (61%), Gaps = 5/128 (3%)
Frame = -2
Query: 588 LVAEYVDPQEVKMKLEPTPAVVIPVSNDLTAHPATPSSKPEPPPLQHSEEPSFPAMLLPP 409
LVAE+VDP EVK KLEP P P++ P+ S + P H+ + S LLP
Sbjct: 811 LVAEFVDPHEVKAKLEPPPPPPAPINPTAATAPSHQSKANQIMP-PHAADTS--RGLLPT 867
Query: 408 PPPLSKLPP----AARERLPPPPP-PEKVDRPIVTLDDLFRKTSAAPRIYYLPLSEEQVA 244
PP L++LP ARE LPP P PE +VTLDDLFRKT A+PRIYY+P+SEE V+
Sbjct: 868 PPALARLPTFNNAPAREMLPPAPKNPEPP--VVVTLDDLFRKTQASPRIYYMPVSEEVVS 925
Query: 243 AKLAVQGK 220
AKLA +GK
Sbjct: 926 AKLAARGK 933
>ref|NP_647904.1| CG11345-PA [Drosophila melanogaster] gi|7292501|gb|AAF47904.1|
CG11345-PA [Drosophila melanogaster]
Length = 238
Score = 57.8 bits (138), Expect = 1e-07
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Frame = -2
Query: 576 YVDPQEVKMKLE----PTPAVVIPVSNDLTAHPATPSSKPEPPPLQHSEEPSFPAMLLPP 409
Y+ P VK ++ P PA + P + +P P+ P PPP+ P PA L PP
Sbjct: 69 YLPPATVKPEIPVVRTPKPAYLPPPPPVIKVNPPKPAYLPPPPPVVKVNPPK-PAYL-PP 126
Query: 408 PPPLSKLPPAARERLPPPPPPEKVDRP 328
PPP+ K+ P LPPPPP KV+ P
Sbjct: 127 PPPVVKVNPPKPSYLPPPPPVVKVNPP 153
Score = 54.3 bits (129), Expect = 1e-06
Identities = 30/84 (35%), Positives = 42/84 (49%), Gaps = 1/84 (1%)
Frame = -2
Query: 576 YVDPQEVKMKLEPT-PAVVIPVSNDLTAHPATPSSKPEPPPLQHSEEPSFPAMLLPPPPP 400
Y+ P +K+ P PA + P + +P P+ P PPP+ P LPPPPP
Sbjct: 89 YLPPPPPVIKVNPPKPAYLPPPPPVVKVNPPKPAYLPPPPPVVKVNPPK--PSYLPPPPP 146
Query: 399 LSKLPPAARERLPPPPPPEKVDRP 328
+ K+ P +PPPPP KV+ P
Sbjct: 147 VVKVNPPKPAYVPPPPPAVKVNPP 170
Score = 45.8 bits (107), Expect = 4e-04
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -2
Query: 576 YVDPQEVKMKLEPT-PAVVIPVSNDLTAHPATPSSKPEPPPLQHSEEPSFPAMLLPPPPP 400
Y+ P +K+ P PA + P + +P PS P PPP+ P PA + PPPPP
Sbjct: 106 YLPPPPPVVKVNPPKPAYLPPPPPVVKVNPPKPSYLPPPPPVVKVNPPK-PAYV-PPPPP 163
Query: 399 LSKLPPAARERLPPPPPPEK 340
K+ P LPP P E+
Sbjct: 164 AVKVNPPKPAYLPPAPVVEQ 183
>ref|NP_176434.1| hypothetical protein; protein id: At1g62440.1 [Arabidopsis
thaliana]
Length = 826
Score = 54.3 bits (129), Expect = 1e-06
Identities = 35/95 (36%), Positives = 42/95 (43%), Gaps = 12/95 (12%)
Frame = -2
Query: 576 YVDPQEVKMKLEPTPAVVIP------VSNDLTAHPATPSSK------PEPPPLQHSEEPS 433
+ P K+ PT V+ P +S A P PSSK PPP PS
Sbjct: 422 FFSPPPPSFKMSPTVRVLPPPPPSSKMSPTFRATPPPPSSKMSPSFRATPPPPSSKMSPS 481
Query: 432 FPAMLLPPPPPLSKLPPAARERLPPPPPPEKVDRP 328
F A PPPP SK+ P+ + PPPPPPE P
Sbjct: 482 FRA---TPPPPSSKMSPSVKAYPPPPPPPEYEPSP 513
Score = 42.0 bits (97), Expect = 0.006
Identities = 24/68 (35%), Positives = 30/68 (43%), Gaps = 3/68 (4%)
Frame = -2
Query: 516 VSNDLTAHPATPSSKPEPPPLQHSEEPSFPAMLLPPPPPLSKLPPAARERLPPP---PPP 346
+S A P PSSK P + P P PPPP S++ P+ R PPP PPP
Sbjct: 478 MSPSFRATPPPPSSKMSPSVKAYPPPPPPPEYEPSPPPPSSEMSPSVRAYPPPPPLSPPP 537
Query: 345 EKVDRPIV 322
P +
Sbjct: 538 PSPPPPYI 545
Score = 41.6 bits (96), Expect = 0.008
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Frame = -2
Query: 540 PTPAVVIPVSNDLTAHPATPSSKPEPPPLQHSEEPSFPAMLLPPPPPLSKLPPAARERLP 361
P P V P P T S P PPP+ ++ P + PPPPP+ P + P
Sbjct: 634 PPPPVYYP--------PVTAS--PPPPPVYYT-----PVIQSPPPPPVY-YSPVTQSPPP 677
Query: 360 PP----------PPPEKVDRPIVTLDDLFRKTSAAPRIYYLPLSE 256
PP PPP V P VT ++ P +YYLP+++
Sbjct: 678 PPPVYYPPVTQSPPPSPVYYPPVT------QSPPPPPVYYLPVTQ 716
Score = 41.2 bits (95), Expect = 0.010
Identities = 37/114 (32%), Positives = 44/114 (38%), Gaps = 18/114 (15%)
Frame = -2
Query: 537 TPAVVIPVSNDLTAHPATPSSKPEP----PPLQHSEEPS----FPAMLLPPPPPLSKL-- 388
TP + P + P T S P P PP+ S PS P PPPPP+ L
Sbjct: 655 TPVIQSPPPPPVYYSPVTQSPPPPPPVYYPPVTQSPPPSPVYYPPVTQSPPPPPVYYLPV 714
Query: 387 ----PPAARERLPP----PPPPEKVDRPIVTLDDLFRKTSAAPRIYYLPLSEEQ 250
PP + PP PPPP V P VT + P Y+ P S Q
Sbjct: 715 TQSPPPPSPVYYPPVAKSPPPPSPVYYPPVTQSP---PPPSTPVEYHPPASPNQ 765
Score = 40.8 bits (94), Expect = 0.013
Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Frame = -2
Query: 576 YVDPQEVKMKLEPTPAVVIPVSNDLTAHPATPSSKPEPPPLQHSEEPSFP---AMLLPPP 406
Y P V + PT P + T P P PP Q++ P P A PPP
Sbjct: 562 YSSPPPV-VNCPPTTQSPPPPKYEQTPSPREYYPSPSPPYYQYTSSPPPPTYYATQSPPP 620
Query: 405 PPLSKLPPAARERLPPPPPPEKVDRPIVTLDDLFRKTSAAPRIYYLPL 262
PP P + PPPPPP V P VT + P +YY P+
Sbjct: 621 PPP---PTYYAVQSPPPPPP--VYYPPVT------ASPPPPPVYYTPV 657
Score = 40.0 bits (92), Expect = 0.022
Identities = 23/58 (39%), Positives = 25/58 (42%), Gaps = 9/58 (15%)
Frame = -2
Query: 492 PATPSSKPEPPPLQHSEEPSFPAMLLPPPPPLSKLPPAARERL---------PPPPPP 346
P P +P PPP PS A PPPPPLS PP+ P PPPP
Sbjct: 504 PPPPEYEPSPPPPSSEMSPSVRAY--PPPPPLSPPPPSPPPPYIYSSPPPPSPSPPPP 559
Score = 39.3 bits (90), Expect = 0.038
Identities = 20/51 (39%), Positives = 24/51 (46%), Gaps = 2/51 (3%)
Frame = -2
Query: 492 PATPSSKPEPPPLQHSEEP--SFPAMLLPPPPPLSKLPPAARERLPPPPPP 346
P PS P PP + S P + P PPPP + P+ RE P P PP
Sbjct: 549 PPPPSPSPPPPYIYSSPPPVVNCPPTTQSPPPPKYEQTPSPREYYPSPSPP 599
Score = 38.5 bits (88), Expect = 0.064
Identities = 26/76 (34%), Positives = 35/76 (45%), Gaps = 10/76 (13%)
Frame = -2
Query: 540 PTPAVVIPVSNDLTAHPATPSSKPEPPPLQHSEEPS---FPAMLLPPPPPLSKL---PPA 379
P P +PV T P PS PP + PS +P + PPPP + + PPA
Sbjct: 706 PPPVYYLPV----TQSPPPPSPVYYPPVAKSPPPPSPVYYPPVTQSPPPPSTPVEYHPPA 761
Query: 378 ARERLPPP----PPPE 343
+ + PPP PPP+
Sbjct: 762 SPNQSPPPEYQSPPPK 777
Score = 37.7 bits (86), Expect = 0.11
Identities = 25/72 (34%), Positives = 29/72 (39%), Gaps = 11/72 (15%)
Frame = -2
Query: 465 PPPLQHSEEPSFPAMLLPPPPPLSKLPPAARERLPPP-----------PPPEKVDRPIVT 319
PPP P+ +LPPPPP SK+ P R PPP PPP P
Sbjct: 425 PPPPSFKMSPT--VRVLPPPPPSSKMSPTFRATPPPPSSKMSPSFRATPPP-----PSSK 477
Query: 318 LDDLFRKTSAAP 283
+ FR T P
Sbjct: 478 MSPSFRATPPPP 489
Score = 33.5 bits (75), Expect = 2.1
Identities = 27/84 (32%), Positives = 37/84 (43%), Gaps = 12/84 (14%)
Frame = -2
Query: 543 EPTPAVVIPVSNDLT----AHPATPSSKPEPP----PLQHSEEPSFPAMLLPPPPPLSKL 388
EP+P P S++++ A+P P P PP P +S P P+ PPP S
Sbjct: 510 EPSPP---PPSSEMSPSVRAYPPPPPLSPPPPSPPPPYIYSSPPP-PSPSPPPPYIYSSP 565
Query: 387 PPAAR----ERLPPPPPPEKVDRP 328
PP + PPPP E+ P
Sbjct: 566 PPVVNCPPTTQSPPPPKYEQTPSP 589
Score = 32.3 bits (72), Expect = 4.6
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Frame = -2
Query: 552 MKLEPTPAVVIPVSNDLTAHPATPSSK--------PEPPPLQHSEEPSFPAMLLPPPPPL 397
+K P P P + P PSS+ P PPPL P + PPP
Sbjct: 497 VKAYPPP----PPPPEYEPSPPPPSSEMSPSVRAYPPPPPLSPPPPSPPPPYIYSSPPPP 552
Query: 396 SKLPPAARERLPPPP----PPEKVDRPIVTLDDLFRKTSAAPRIYY 271
S PP PPP PP P + + +PR YY
Sbjct: 553 SPSPPPPYIYSSPPPVVNCPPTTQSPPPPKYEQ-----TPSPREYY 593
>pir||T01456 extensin homolog F24O1.18 - Arabidopsis thaliana
gi|5454187|gb|AAD43602.1|AC005698_1 T3P18.1 [Arabidopsis
thaliana] gi|7940282|gb|AAF70841.1|AC003113_8 F24O1.18
[Arabidopsis thaliana]
Length = 786
Score = 54.3 bits (129), Expect = 1e-06
Identities = 35/95 (36%), Positives = 42/95 (43%), Gaps = 12/95 (12%)
Frame = -2
Query: 576 YVDPQEVKMKLEPTPAVVIP------VSNDLTAHPATPSSK------PEPPPLQHSEEPS 433
+ P K+ PT V+ P +S A P PSSK PPP PS
Sbjct: 382 FFSPPPPSFKMSPTVRVLPPPPPSSKMSPTFRATPPPPSSKMSPSFRATPPPPSSKMSPS 441
Query: 432 FPAMLLPPPPPLSKLPPAARERLPPPPPPEKVDRP 328
F A PPPP SK+ P+ + PPPPPPE P
Sbjct: 442 FRA---TPPPPSSKMSPSVKAYPPPPPPPEYEPSP 473
Score = 42.0 bits (97), Expect = 0.006
Identities = 24/68 (35%), Positives = 30/68 (43%), Gaps = 3/68 (4%)
Frame = -2
Query: 516 VSNDLTAHPATPSSKPEPPPLQHSEEPSFPAMLLPPPPPLSKLPPAARERLPPP---PPP 346
+S A P PSSK P + P P PPPP S++ P+ R PPP PPP
Sbjct: 438 MSPSFRATPPPPSSKMSPSVKAYPPPPPPPEYEPSPPPPSSEMSPSVRAYPPPPPLSPPP 497
Query: 345 EKVDRPIV 322
P +
Sbjct: 498 PSPPPPYI 505
Score = 41.6 bits (96), Expect = 0.008
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Frame = -2
Query: 540 PTPAVVIPVSNDLTAHPATPSSKPEPPPLQHSEEPSFPAMLLPPPPPLSKLPPAARERLP 361
P P V P P T S P PPP+ ++ P + PPPPP+ P + P
Sbjct: 594 PPPPVYYP--------PVTAS--PPPPPVYYT-----PVIQSPPPPPVY-YSPVTQSPPP 637
Query: 360 PP----------PPPEKVDRPIVTLDDLFRKTSAAPRIYYLPLSE 256
PP PPP V P VT ++ P +YYLP+++
Sbjct: 638 PPPVYYPPVTQSPPPSPVYYPPVT------QSPPPPPVYYLPVTQ 676
Score = 41.2 bits (95), Expect = 0.010
Identities = 37/114 (32%), Positives = 44/114 (38%), Gaps = 18/114 (15%)
Frame = -2
Query: 537 TPAVVIPVSNDLTAHPATPSSKPEP----PPLQHSEEPS----FPAMLLPPPPPLSKL-- 388
TP + P + P T S P P PP+ S PS P PPPPP+ L
Sbjct: 615 TPVIQSPPPPPVYYSPVTQSPPPPPPVYYPPVTQSPPPSPVYYPPVTQSPPPPPVYYLPV 674
Query: 387 ----PPAARERLPP----PPPPEKVDRPIVTLDDLFRKTSAAPRIYYLPLSEEQ 250
PP + PP PPPP V P VT + P Y+ P S Q
Sbjct: 675 TQSPPPPSPVYYPPVAKSPPPPSPVYYPPVTQSP---PPPSTPVEYHPPASPNQ 725
Score = 40.8 bits (94), Expect = 0.013
Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Frame = -2
Query: 576 YVDPQEVKMKLEPTPAVVIPVSNDLTAHPATPSSKPEPPPLQHSEEPSFP---AMLLPPP 406
Y P V + PT P + T P P PP Q++ P P A PPP
Sbjct: 522 YSSPPPV-VNCPPTTQSPPPPKYEQTPSPREYYPSPSPPYYQYTSSPPPPTYYATQSPPP 580
Query: 405 PPLSKLPPAARERLPPPPPPEKVDRPIVTLDDLFRKTSAAPRIYYLPL 262
PP P + PPPPPP V P VT + P +YY P+
Sbjct: 581 PPP---PTYYAVQSPPPPPP--VYYPPVT------ASPPPPPVYYTPV 617
Score = 40.0 bits (92), Expect = 0.022
Identities = 23/58 (39%), Positives = 25/58 (42%), Gaps = 9/58 (15%)
Frame = -2
Query: 492 PATPSSKPEPPPLQHSEEPSFPAMLLPPPPPLSKLPPAARERL---------PPPPPP 346
P P +P PPP PS A PPPPPLS PP+ P PPPP
Sbjct: 464 PPPPEYEPSPPPPSSEMSPSVRAY--PPPPPLSPPPPSPPPPYIYSSPPPPSPSPPPP 519
Score = 39.3 bits (90), Expect = 0.038
Identities = 20/51 (39%), Positives = 24/51 (46%), Gaps = 2/51 (3%)
Frame = -2
Query: 492 PATPSSKPEPPPLQHSEEP--SFPAMLLPPPPPLSKLPPAARERLPPPPPP 346
P PS P PP + S P + P PPPP + P+ RE P P PP
Sbjct: 509 PPPPSPSPPPPYIYSSPPPVVNCPPTTQSPPPPKYEQTPSPREYYPSPSPP 559
Score = 38.5 bits (88), Expect = 0.064
Identities = 26/76 (34%), Positives = 35/76 (45%), Gaps = 10/76 (13%)
Frame = -2
Query: 540 PTPAVVIPVSNDLTAHPATPSSKPEPPPLQHSEEPS---FPAMLLPPPPPLSKL---PPA 379
P P +PV T P PS PP + PS +P + PPPP + + PPA
Sbjct: 666 PPPVYYLPV----TQSPPPPSPVYYPPVAKSPPPPSPVYYPPVTQSPPPPSTPVEYHPPA 721
Query: 378 ARERLPPP----PPPE 343
+ + PPP PPP+
Sbjct: 722 SPNQSPPPEYQSPPPK 737
Score = 37.7 bits (86), Expect = 0.11
Identities = 25/72 (34%), Positives = 29/72 (39%), Gaps = 11/72 (15%)
Frame = -2
Query: 465 PPPLQHSEEPSFPAMLLPPPPPLSKLPPAARERLPPP-----------PPPEKVDRPIVT 319
PPP P+ +LPPPPP SK+ P R PPP PPP P
Sbjct: 385 PPPPSFKMSPT--VRVLPPPPPSSKMSPTFRATPPPPSSKMSPSFRATPPP-----PSSK 437
Query: 318 LDDLFRKTSAAP 283
+ FR T P
Sbjct: 438 MSPSFRATPPPP 449
Score = 33.5 bits (75), Expect = 2.1
Identities = 27/84 (32%), Positives = 37/84 (43%), Gaps = 12/84 (14%)
Frame = -2
Query: 543 EPTPAVVIPVSNDLT----AHPATPSSKPEPP----PLQHSEEPSFPAMLLPPPPPLSKL 388
EP+P P S++++ A+P P P PP P +S P P+ PPP S
Sbjct: 470 EPSPP---PPSSEMSPSVRAYPPPPPLSPPPPSPPPPYIYSSPPP-PSPSPPPPYIYSSP 525
Query: 387 PPAAR----ERLPPPPPPEKVDRP 328
PP + PPPP E+ P
Sbjct: 526 PPVVNCPPTTQSPPPPKYEQTPSP 549
Score = 32.3 bits (72), Expect = 4.6
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Frame = -2
Query: 552 MKLEPTPAVVIPVSNDLTAHPATPSSK--------PEPPPLQHSEEPSFPAMLLPPPPPL 397
+K P P P + P PSS+ P PPPL P + PPP
Sbjct: 457 VKAYPPP----PPPPEYEPSPPPPSSEMSPSVRAYPPPPPLSPPPPSPPPPYIYSSPPPP 512
Query: 396 SKLPPAARERLPPPP----PPEKVDRPIVTLDDLFRKTSAAPRIYY 271
S PP PPP PP P + + +PR YY
Sbjct: 513 SPSPPPPYIYSSPPPVVNCPPTTQSPPPPKYEQ-----TPSPREYY 553
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,128,443
Number of Sequences: 1393205
Number of extensions: 14405033
Number of successful extensions: 310158
Number of sequences better than 10.0: 5827
Number of HSP's better than 10.0 without gapping: 98392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194592
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
