Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016878A_C01 KMC016878A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA95872.1| Similar to Arabidopsis thaliana chromosome 4 BAC... 87 1e-16
gb|AAM62486.1| unknown [Arabidopsis thaliana] 75 4e-13
ref|NP_567855.1| Expressed protein; protein id: At4g30820.1, sup... 75 4e-13
pir||G85360 puative protein [imported] - Arabidopsis thaliana gi... 75 4e-13
gb|EAA33091.1| predicted protein [Neurospora crassa] 40 0.013
>dbj|BAA95872.1| Similar to Arabidopsis thaliana chromosome 4 BAC F6I18;
membrane-associated salt-inducible protein. (AL022198)
[Oryza sativa (japonica cultivar-group)]
Length = 232
Score = 87.0 bits (214), Expect = 1e-16
Identities = 42/62 (67%), Positives = 53/62 (84%)
Frame = -2
Query: 400 PPRPTGMAPQPLPLGGSVMPGYAGDDDETMRLRAERGARAGGWSLEISRKRALEEAFGSL 221
PPRPTGMAPQP+ GGS +P GDD+ETMRLRAE GARAGGWS+E+ ++RAL+EAF ++
Sbjct: 174 PPRPTGMAPQPI--GGSSVP-LQGDDEETMRLRAESGARAGGWSIEMCKRRALQEAFSTI 230
Query: 220 WV 215
+V
Sbjct: 231 FV 232
>gb|AAM62486.1| unknown [Arabidopsis thaliana]
Length = 178
Score = 75.1 bits (183), Expect = 4e-13
Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -2
Query: 478 PTANDVGPSPDFGAVPQGPYAPTFAGPPRPTGMAPQPLPL-GGSVMPGYAGDDDETMRLR 302
P D S + G T+ RPTGM PQP+P+ GG+ YA +D+ T R++
Sbjct: 97 PPQTDADTSSNHGVTA----GATYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRMK 152
Query: 301 AERGARAGGWSLEISRKRALEEAFGSLWV 215
AER AGG+SLEIS++RALEEAF S+WV
Sbjct: 153 AER---AGGFSLEISKRRALEEAFASIWV 178
>ref|NP_567855.1| Expressed protein; protein id: At4g30820.1, supported by cDNA:
14193. [Arabidopsis thaliana] gi|27754379|gb|AAO22638.1|
unknown protein [Arabidopsis thaliana]
gi|28393901|gb|AAO42358.1| unknown protein [Arabidopsis
thaliana]
Length = 178
Score = 75.1 bits (183), Expect = 4e-13
Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -2
Query: 478 PTANDVGPSPDFGAVPQGPYAPTFAGPPRPTGMAPQPLPL-GGSVMPGYAGDDDETMRLR 302
P D S + G T+ RPTGM PQP+P+ GG+ YA +D+ T R++
Sbjct: 97 PPQTDADTSSNHGVTA----GTTYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRMK 152
Query: 301 AERGARAGGWSLEISRKRALEEAFGSLWV 215
AER AGG+SLEIS++RALEEAF S+WV
Sbjct: 153 AER---AGGFSLEISKRRALEEAFASIWV 178
>pir||G85360 puative protein [imported] - Arabidopsis thaliana
gi|2980784|emb|CAA18211.1| puative protein [Arabidopsis
thaliana] gi|7269983|emb|CAB79800.1| puative protein
[Arabidopsis thaliana]
Length = 1075
Score = 75.1 bits (183), Expect = 4e-13
Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -2
Query: 478 PTANDVGPSPDFGAVPQGPYAPTFAGPPRPTGMAPQPLPL-GGSVMPGYAGDDDETMRLR 302
P D S + G T+ RPTGM PQP+P+ GG+ YA +D+ T R++
Sbjct: 108 PPQTDADTSSNHGVTA----GTTYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRMK 163
Query: 301 AERGARAGGWSLEISRKRALEEAFGSLWV 215
AER AGG+SLEIS++RALEEAF S+WV
Sbjct: 164 AER---AGGFSLEISKRRALEEAFASIWV 189
>gb|EAA33091.1| predicted protein [Neurospora crassa]
Length = 745
Score = 40.0 bits (92), Expect = 0.013
Identities = 19/41 (46%), Positives = 20/41 (48%)
Frame = -2
Query: 451 PDFGAVPQGPYAPTFAGPPRPTGMAPQPLPLGGSVMPGYAG 329
P GA P GP GPP P GM P P GG PG+ G
Sbjct: 664 PPGGAFPPGPPPDGLVGPPPPRGMQPPPGFFGGGPPPGFMG 704
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,877,680
Number of Sequences: 1393205
Number of extensions: 11980022
Number of successful extensions: 50239
Number of sequences better than 10.0: 229
Number of HSP's better than 10.0 without gapping: 36396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48842
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
