Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016875A_C01 KMC016875A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566942.1| expressed protein; protein id: At3g51010.1, sup... 194 7e-49
gb|AAM62545.1| unknown [Arabidopsis thaliana] 194 7e-49
ref|NP_035844.1| bromodomain adjacent to zinc finger domain, 1B;... 41 0.010
dbj|BAB17013.1| hypothetical protein [Macaca fascicularis] 40 0.014
gb|EAA42494.1| GLP_587_87663_89534 [Giardia lamblia ATCC 50803] 39 0.030
>ref|NP_566942.1| expressed protein; protein id: At3g51010.1, supported by cDNA:
14475. [Arabidopsis thaliana] gi|11280693|pir||T45732
hypothetical protein F24M12.50 - Arabidopsis thaliana
gi|6562253|emb|CAB62623.1| hypothetical protein
[Arabidopsis thaliana]
Length = 188
Score = 194 bits (492), Expect = 7e-49
Identities = 95/130 (73%), Positives = 111/130 (85%), Gaps = 2/130 (1%)
Frame = -1
Query: 535 PLRNHFHSL--TDTRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNKPNEGSVK 362
P+ NHFHSL TDTR PKRRP P+RKR+ L+PPGPYA+VQYTPG+PI N PNEGSVK
Sbjct: 58 PMANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVK 117
Query: 361 RRNEKKRMRQHRAFILAERKKRKAQMQEANRKKSIKRVERKMAAVARERAWAERLAELQR 182
RRN KKR+ Q RAFIL+E+KKR+A +QEA RKK IK+VERKMAAVAR+RAWAERL ELQ+
Sbjct: 118 RRNAKKRIGQRRAFILSEKKKRQALVQEAKRKKRIKQVERKMAAVARDRAWAERLIELQQ 177
Query: 181 LEKEKKNSMA 152
LE+EKK SM+
Sbjct: 178 LEEEKKKSMS 187
>gb|AAM62545.1| unknown [Arabidopsis thaliana]
Length = 188
Score = 194 bits (492), Expect = 7e-49
Identities = 95/130 (73%), Positives = 111/130 (85%), Gaps = 2/130 (1%)
Frame = -1
Query: 535 PLRNHFHSL--TDTRFPKRRPSDKPRRKRASLRPPGPYAWVQYTPGEPILPNKPNEGSVK 362
P+ NHFHSL TDTR PKRRP P+RKR+ L+PPGPYA+VQYTPG+PI N PNEGSVK
Sbjct: 58 PMANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVK 117
Query: 361 RRNEKKRMRQHRAFILAERKKRKAQMQEANRKKSIKRVERKMAAVARERAWAERLAELQR 182
RRN KKR+ Q RAFIL+E+KKR+A +QEA RKK IK+VERKMAAVAR+RAWAERL ELQ+
Sbjct: 118 RRNAKKRIGQRRAFILSEKKKRQALVQEAKRKKRIKQVERKMAAVARDRAWAERLIELQQ 177
Query: 181 LEKEKKNSMA 152
LE+EKK SM+
Sbjct: 178 LEEEKKKSMS 187
>ref|NP_035844.1| bromodomain adjacent to zinc finger domain, 1B; Williams-Beuren
syndrome chromosome region 9 homolog (human) [Mus
musculus] gi|22653671|sp|Q9Z277|BA1B_MOUSE Bromodomain
adjacent to zinc finger domain protein 1B
(Williams-Beuren syndrome chromosome region 9 protein
homolog) (WBRS9) gi|7513860|pir||T17401 transcription
regulator WBSCR9 - mouse gi|4165089|gb|AAD08676.1|
Williams-Beuren syndrome deletion transcript 9 homolog
[Mus musculus]
Length = 1479
Score = 40.8 bits (94), Expect = 0.010
Identities = 27/73 (36%), Positives = 41/73 (55%), Gaps = 1/73 (1%)
Frame = -1
Query: 379 NEGSVKRRNEKKRMRQHRAFILAERKKRKAQMQEANRKKSIKRVERKMAAVARERAWAER 200
NE + E + + Q R + L E KKR A M E RK+ +K+ +++ RE+A R
Sbjct: 509 NEDRARLPEELRALVQKR-YELLEHKKRWASMSEEQRKEYLKKKRQELKERLREKAKERR 567
Query: 199 LAE-LQRLEKEKK 164
E L+RLEK+K+
Sbjct: 568 EREMLERLEKQKR 580
>dbj|BAB17013.1| hypothetical protein [Macaca fascicularis]
Length = 254
Score = 40.4 bits (93), Expect = 0.014
Identities = 33/127 (25%), Positives = 56/127 (43%), Gaps = 22/127 (17%)
Frame = -1
Query: 493 PKRRPSDKPRRKRASLRPPGPYAWVQY----TPGEPILPNKPNEG--------------- 371
PK + D PR + +PP + + TPG P + G
Sbjct: 34 PKIQDQDSPREQNKHFKPPSSFEKWEIARGNTPGVPSAYDGYRSGLSTEFQAPLAFQSGV 93
Query: 370 ---SVKRRNEKKRMRQHRAFILAERKKRKAQMQEANRKKSIKRVERKMAAVARERAWAER 200
K+ +K+ +R R F+ ER++ K Q ++ +KK I+++++K RE+ ER
Sbjct: 94 DKEEDKKERQKQYLRHRRLFMDIEREQVKEQQRQKEQKKKIEKIKKK-----REQ---ER 145
Query: 199 LAELQRL 179
AE QR+
Sbjct: 146 YAEEQRI 152
>gb|EAA42494.1| GLP_587_87663_89534 [Giardia lamblia ATCC 50803]
Length = 623
Score = 39.3 bits (90), Expect = 0.030
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Frame = -1
Query: 397 ILPNKPNEGSVKRRNEKKRMRQHRAFILAERKKRK-----AQMQEANRKKSIKRVERKMA 233
+L + E + +R E++R+R LAE K++ A+ +E KK I+ ++R+
Sbjct: 322 LLKLQQGEERLAKRKEEERLRLEEEHKLAEEKEKARLELLAKQRELAEKKRIEALQREKE 381
Query: 232 AV--ARERAWAERLAELQRLEKEK 167
ARE+A A RL E +LE+EK
Sbjct: 382 REERAREQAEARRLEEKLKLEEEK 405
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,832,997
Number of Sequences: 1393205
Number of extensions: 9101317
Number of successful extensions: 38211
Number of sequences better than 10.0: 385
Number of HSP's better than 10.0 without gapping: 33447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37094
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
