Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016868A_C01 KMC016868A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK39567.1|AC025296_2 putative electron transfer oxidoreducta... 219 2e-56
ref|NP_181868.1| putative electron transfer flavoprotein ubiquin... 214 7e-55
ref|ZP_00030530.1| hypothetical protein [Burkholderia fungorum] 162 2e-39
gb|ZP_00094879.1| hypothetical protein [Novosphingobium aromatic... 161 5e-39
ref|ZP_00091699.1| hypothetical protein [Azotobacter vinelandii] 160 9e-39
>gb|AAK39567.1|AC025296_2 putative electron transfer oxidoreductase [Oryza sativa]
Length = 536
Score = 219 bits (557), Expect = 2e-56
Identities = 96/114 (84%), Positives = 104/114 (91%)
Frame = -1
Query: 535 SPIHYPKADGVLSFDVPTSLHRSNTNHEHDQPPHLRLRDPKIPEHVNLPVYAAPESRYCP 356
SPI YPK DG +SFDVPTSL+RS+TNHEHDQPPHLRLRDP +PE VNLP+YA PES YCP
Sbjct: 423 SPIQYPKPDGQISFDVPTSLYRSSTNHEHDQPPHLRLRDPTVPERVNLPLYAGPESHYCP 482
Query: 355 ARVYEYVVDEQNQKKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 194
ARVYEYV DE+ +KLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGY+VM
Sbjct: 483 ARVYEYVTDEKGDQKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYTVM 536
>ref|NP_181868.1| putative electron transfer flavoprotein ubiquinone oxidoreductase;
protein id: At2g43400.1 [Arabidopsis thaliana]
gi|25408864|pir||F84865 hypothetical protein At2g43400
[imported] - Arabidopsis thaliana
gi|2288999|gb|AAB64328.1| putative electron transfer
flavoprotein ubiquinone oxidoreductase [Arabidopsis
thaliana]
Length = 633
Score = 214 bits (544), Expect = 7e-55
Identities = 96/114 (84%), Positives = 103/114 (90%)
Frame = -1
Query: 535 SPIHYPKADGVLSFDVPTSLHRSNTNHEHDQPPHLRLRDPKIPEHVNLPVYAAPESRYCP 356
+PI YPK DGVLSFDVPTSL+RSNTNH+HDQP HLRLRDPKIPE VN P YAAPESRYCP
Sbjct: 520 TPIVYPKPDGVLSFDVPTSLYRSNTNHDHDQPSHLRLRDPKIPEKVNFPEYAAPESRYCP 579
Query: 355 ARVYEYVVDEQNQKKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 194
ARVYEY+ DE+ + KL INAQNCLHCKACDIKDPKQNIEWTVPEGGGGP YS+M
Sbjct: 580 ARVYEYIEDEEGKPKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPAYSLM 633
>ref|ZP_00030530.1| hypothetical protein [Burkholderia fungorum]
Length = 558
Score = 162 bits (411), Expect = 2e-39
Identities = 72/113 (63%), Positives = 86/113 (75%)
Frame = -1
Query: 532 PIHYPKADGVLSFDVPTSLHRSNTNHEHDQPPHLRLRDPKIPEHVNLPVYAAPESRYCPA 353
PI YPK DG L+FD +S+ SNTNHE +QPPHL L+DP +P +VN YA PESRYCPA
Sbjct: 446 PITYPKPDGKLTFDRLSSVFISNTNHEENQPPHLTLKDPSVPVNVNWQTYAGPESRYCPA 505
Query: 352 RVYEYVVDEQNQKKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 194
+VYE+V ++ N ++L INAQNC+HCK CDIKDP QNI W PEGGGGP Y M
Sbjct: 506 QVYEFVKNDDNTERLVINAQNCVHCKTCDIKDPTQNIVWVTPEGGGGPNYPNM 558
>gb|ZP_00094879.1| hypothetical protein [Novosphingobium aromaticivorans]
Length = 294
Score = 161 bits (407), Expect = 5e-39
Identities = 72/113 (63%), Positives = 84/113 (73%)
Frame = -1
Query: 532 PIHYPKADGVLSFDVPTSLHRSNTNHEHDQPPHLRLRDPKIPEHVNLPVYAAPESRYCPA 353
PI YPK DGV++FD TS+ S TNHE DQP HL L+DP++P +NLP+YA PE RYCPA
Sbjct: 182 PIAYPKPDGVITFDRLTSVSFSYTNHEEDQPCHLVLKDPEVPTRINLPLYAGPEQRYCPA 241
Query: 352 RVYEYVVDEQNQKKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 194
VYEYV E+ +L INAQNC+HCK CDIKD QNI+W PEGGGGP Y M
Sbjct: 242 GVYEYVGVEEGNPRLQINAQNCVHCKTCDIKDMTQNIDWVTPEGGGGPNYPNM 294
>ref|ZP_00091699.1| hypothetical protein [Azotobacter vinelandii]
Length = 602
Score = 160 bits (405), Expect = 9e-39
Identities = 76/113 (67%), Positives = 81/113 (71%)
Frame = -1
Query: 532 PIHYPKADGVLSFDVPTSLHRSNTNHEHDQPPHLRLRDPKIPEHVNLPVYAAPESRYCPA 353
PI YPK DGVL FD S+ SNTNHE DQP HLRL DP IP NLP+YA P RYCPA
Sbjct: 490 PIVYPKPDGVLGFDRLGSVFLSNTNHEEDQPCHLRLADPAIPIGRNLPLYAEPAQRYCPA 549
Query: 352 RVYEYVVDEQNQKKLHINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 194
VYE + +EQ +L INAQNCLHCK CDIKDP QNI WT PEGGGGP Y M
Sbjct: 550 GVYEVLEEEQGGPRLQINAQNCLHCKTCDIKDPAQNIVWTTPEGGGGPNYPNM 602
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,142,992
Number of Sequences: 1393205
Number of extensions: 9852938
Number of successful extensions: 24937
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 23629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24856
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
