Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016857A_C01 KMC016857A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL16240.1|AF428471_1 AT4g14220/dl3150w [Arabidopsis thaliana] 44 0.001
ref|NP_193158.1| RING-H2 finger protein RHF1a; protein id: At4g1... 44 0.001
pir||G71403 hypothetical protein - Arabidopsis thaliana 44 0.001
dbj|BAC42605.1| putative RING-H2 finger protein RHF1a [Arabidops... 44 0.001
pir||T51853 RING-H2 finger protein RHF1a [imported] - Arabidopsi... 44 0.001
>gb|AAL16240.1|AF428471_1 AT4g14220/dl3150w [Arabidopsis thaliana]
Length = 161
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = -3
Query: 548 EMNAGISGVARMIXRLDLSSKR--SAALFPDRTGETSGFPEEVKS--VKEHSPSEDNED 384
EMNAGI+GVARMI R+D SSKR +A T SGF K V+ +S S +N D
Sbjct: 90 EMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKGKRVEANSKSNNNGD 148
>ref|NP_193158.1| RING-H2 finger protein RHF1a; protein id: At4g14220.1 [Arabidopsis
thaliana] gi|25360953|pir||C85155 RING-H2 finger protein
RHF1a [imported] - Arabidopsis thaliana
gi|5280989|emb|CAB46003.1| RING-H2 finger protein RHF1a
[Arabidopsis thaliana] gi|7268127|emb|CAB78464.1|
RING-H2 finger protein RHF1a [Arabidopsis thaliana]
Length = 376
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = -3
Query: 548 EMNAGISGVARMIXRLDLSSKR--SAALFPDRTGETSGFPEEVKS--VKEHSPSEDNED 384
EMNAGI+GVARMI R+D SSKR +A T SGF K V+ +S S +N D
Sbjct: 300 EMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKGKRVEANSKSNNNGD 358
>pir||G71403 hypothetical protein - Arabidopsis thaliana
Length = 354
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = -3
Query: 548 EMNAGISGVARMIXRLDLSSKR--SAALFPDRTGETSGFPEEVKS--VKEHSPSEDNED 384
EMNAGI+GVARMI R+D SSKR +A T SGF K V+ +S S +N D
Sbjct: 226 EMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKGKRVEANSKSNNNGD 284
>dbj|BAC42605.1| putative RING-H2 finger protein RHF1a [Arabidopsis thaliana]
Length = 371
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = -3
Query: 548 EMNAGISGVARMIXRLDLSSKR--SAALFPDRTGETSGFPEEVKS--VKEHSPSEDNED 384
EMNAGI+GVARMI R+D SSKR +A T SGF K V+ +S S +N D
Sbjct: 300 EMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKGKRVEANSKSNNNGD 358
>pir||T51853 RING-H2 finger protein RHF1a [imported] - Arabidopsis thaliana
(fragment) gi|3790585|gb|AAC69855.1| RING-H2 finger
protein RHF1a [Arabidopsis thaliana]
Length = 329
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = -3
Query: 548 EMNAGISGVARMIXRLDLSSKR--SAALFPDRTGETSGFPEEVKS--VKEHSPSEDNED 384
EMNAGI+GVARMI R+D SSKR +A T SGF K V+ +S S +N D
Sbjct: 258 EMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKGKRVEANSKSNNNGD 316
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,812,358
Number of Sequences: 1393205
Number of extensions: 9172817
Number of successful extensions: 23270
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23222
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
