Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016856A_C01 KMC016856A_c01
(987 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174174.1| unknown protein; protein id: At1g28520.1 [Arabi... 106 6e-22
ref|NP_565972.1| expressed protein; protein id: At2g42400.1, sup... 71 2e-11
dbj|BAB89542.1| P0435B05.21 [Oryza sativa (japonica cultivar-gro... 66 9e-10
pir||E84853 hypothetical protein At2g42400 [imported] - Arabidop... 62 2e-08
ref|NP_704004.1| hypothetical protein [Plasmodium falciparum 3D7... 39 0.095
>ref|NP_174174.1| unknown protein; protein id: At1g28520.1 [Arabidopsis thaliana]
gi|25370819|pir||B86411 protein F3M18.4 [imported] -
Arabidopsis thaliana
gi|6560771|gb|AAF16771.1|AC010155_24 F3M18.4
[Arabidopsis thaliana]
Length = 486
Score = 106 bits (264), Expect = 6e-22
Identities = 71/178 (39%), Positives = 98/178 (54%), Gaps = 14/178 (7%)
Frame = +2
Query: 434 MMGKNSKGKCGSPSRQSMKEKEKHLVDKIQGIFTNLQYARKENRANDIVICEEQMHQFLR 613
M GK SK C S S + K+K K+ VD +QG+ +LQ+ARKE+R D+ + EEQ++Q LR
Sbjct: 1 MTGKRSKTNCRSASHKLFKDKAKNRVDDLQGMLLDLQFARKESRPTDVTLLEEQVNQMLR 60
Query: 614 EWKAELE--SPATSL-ANGSFDSFTGELAQLLQEIEEQDDATSPLTKPVPLKTEPHPNNV 784
EWK+EL SPA+SL G+ SF+ ++ +LLQ +E+DDATS L P P EP N+
Sbjct: 61 EWKSELNEPSPASSLQQGGTLGSFSSDICRLLQLCDEEDDATSKLAAPKP---EPADQNL 117
Query: 785 SDSSYPFFEEKCFNDNQPLYHTFEGSSS---TLYNN-------AFNNSD-IIQLDYHQ 925
F+ Y+ +G S L +N A NN D L+YHQ
Sbjct: 118 EAGKAAVFQRG--------YNLVQGKSEHGLPLVDNCKDLSLAAGNNFDGTAPLEYHQ 167
>ref|NP_565972.1| expressed protein; protein id: At2g42400.1, supported by cDNA:
gi_13605699, supported by cDNA: gi_18700277 [Arabidopsis
thaliana] gi|13605700|gb|AAK32843.1|AF361831_1
At2g42400/MHK10.12 [Arabidopsis thaliana]
gi|18700278|gb|AAL77749.1| At2g42400/MHK10.12
[Arabidopsis thaliana] gi|20197490|gb|AAD23723.2|
expressed protein [Arabidopsis thaliana]
Length = 450
Score = 71.2 bits (173), Expect = 2e-11
Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Frame = +2
Query: 473 SRQSMKEKEKHLVDKIQGIFTNLQYARKENRANDIVICEEQMHQFLREWKAEL--ESPAT 646
+ Q+++EK + L ++ F +LQ ARKE R D+ + E Q+ Q +REW+AEL SP +
Sbjct: 10 AHQNVEEKLRELQER----FCHLQAARKEGRHGDLALLEAQISQNIREWQAELTAPSPES 65
Query: 647 SLANGSFDSFTGELAQLLQEIEEQDDATSPLTKPVPLKTEPHPNNVSDSSYP------FF 808
SL F E A LL +++E+DDATS L + K P P S S P F
Sbjct: 66 SLLGEGISQFLEEFAPLL-KLDEEDDATSTLKEHAGAK--PDPEGFSQSLCPPEWTSENF 122
Query: 809 EEKCFNDN----------------QPLYHTFEGSSSTLYNNAFNNSDIIQLDYHQLSLNH 940
+ FN N Q L++ +EG ++ + N++ D+H L+
Sbjct: 123 SQSPFNGNFSCGFEDALNSTETHGQQLHYGYEG-----FDPSINSAP----DFHDQKLSS 173
Query: 941 NLD 949
NLD
Sbjct: 174 NLD 176
>dbj|BAB89542.1| P0435B05.21 [Oryza sativa (japonica cultivar-group)]
Length = 636
Score = 65.9 bits (159), Expect = 9e-10
Identities = 40/105 (38%), Positives = 58/105 (55%)
Frame = +2
Query: 479 QSMKEKEKHLVDKIQGIFTNLQYARKENRANDIVICEEQMHQFLREWKAELESPATSLAN 658
+ + + K VD +Q +F+ LQ ARKE R+ D + E Q+HQ LREW+AEL S +
Sbjct: 97 RQFRARAKTRVDDLQEMFSGLQSARKEARSTDAAVLEAQLHQMLREWRAEL-SQGNNREL 155
Query: 659 GSFDSFTGELAQLLQEIEEQDDATSPLTKPVPLKTEPHPNNVSDS 793
S T L QL EE+DDATS L + + + HP + + +
Sbjct: 156 SDPPSETLRLLQLAAAEEEEDDATSKLVE----QQQQHPPSANQA 196
>pir||E84853 hypothetical protein At2g42400 [imported] - Arabidopsis thaliana
Length = 473
Score = 61.6 bits (148), Expect = 2e-08
Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 46/205 (22%)
Frame = +2
Query: 473 SRQSMKEKEKHLVDKIQGIFTNLQYARKENRANDIVICEEQMHQFLREWKAEL--ESPAT 646
+ Q+++EK + L ++ F +LQ ARKE R D+ + E Q+ Q +REW+AEL SP +
Sbjct: 10 AHQNVEEKLRELQER----FCHLQAARKEGRHGDLALLEAQISQNIREWQAELTAPSPES 65
Query: 647 SL---------------ANGSFDSFTGE-LAQLLQE------IEEQDDATSPLTKPVPLK 760
SL +N +S +GE ++Q L+E ++E+DDATS L + K
Sbjct: 66 SLLVRPTPLPYFSMVYGSNSLKNSESGEGISQFLEEFAPLLKLDEEDDATSTLKEHAGAK 125
Query: 761 TEPHPNNVSDSSYP------FFEEKCFNDN----------------QPLYHTFEGSSSTL 874
P P S S P F + FN N Q L++ +EG
Sbjct: 126 --PDPEGFSQSLCPPEWTSENFSQSPFNGNFSCGFEDALNSTETHGQQLHYGYEG----- 178
Query: 875 YNNAFNNSDIIQLDYHQLSLNHNLD 949
++ + N++ D+H L+ NLD
Sbjct: 179 FDPSINSAP----DFHDQKLSSNLD 199
>ref|NP_704004.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498742|emb|CAD50812.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 3535
Score = 39.3 bits (90), Expect = 0.095
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = -2
Query: 284 TLKQNKAQSTLQSNNHNNYKKNTKKQTNCNIDGPNR*HYPSNPS*PSLELSV*KLNLQEN 105
T+ NK ++ ++ NN+NN KKN K++ N NID HY + P +L+ K L E
Sbjct: 3417 TVNGNKIKNIIKDNNNNNKKKNNKRKNNINIDN----HY-TKPQNVHQQLTKQKKILIEP 3471
Query: 104 QEMGNLTSVSNWR 66
Q++ L ++ N++
Sbjct: 3472 QKL--LAAIQNFK 3482
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 849,304,487
Number of Sequences: 1393205
Number of extensions: 19624947
Number of successful extensions: 94180
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 63412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82799
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 56851631560
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
