Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016854A_C01 KMC016854A_c01
(479 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89662.1| putative ubiquitin conjugating enzyme [Oryza sat... 115 2e-25
pir||S57619 ubiquitin conjugating enzyme - tomato gi|886679|emb|... 114 5e-25
ref|NP_199900.1| ubiquitin-conjugating enzyme-like protein; prot... 104 6e-22
ref|NP_705446.1| ubiquitin-conjugating enzyme, putative [Plasmod... 62 3e-09
gb|EAA20958.1| ubiquitin conjugating enzyme [Plasmodium yoelii y... 60 2e-08
>dbj|BAB89662.1| putative ubiquitin conjugating enzyme [Oryza sativa (japonica
cultivar-group)] gi|20805218|dbj|BAB92885.1| putative
ubiquitin conjugating enzyme [Oryza sativa (japonica
cultivar-group)]
Length = 195
Score = 115 bits (288), Expect = 2e-25
Identities = 56/77 (72%), Positives = 64/77 (82%)
Frame = -2
Query: 478 APQPDDPPDAVVAQPYLKDYPTFVNPARYWTESFAKASSRGIEDKVQKLVEMGFPEAQVR 299
AP PDDP DAVVAQ YL+DY TF ARYWTE+FAK SS G+E+KVQKLVEMGFPE VR
Sbjct: 116 APAPDDPQDAVVAQQYLRDYSTFSATARYWTEAFAKNSSTGMEEKVQKLVEMGFPEDMVR 175
Query: 298 SLLESVGGDENLALARL 248
S+L+SV GDEN+AL +L
Sbjct: 176 SVLKSVNGDENMALEKL 192
>pir||S57619 ubiquitin conjugating enzyme - tomato gi|886679|emb|CAA58111.1|
ubiquitin conjugating enzyme [Lycopersicon esculentum]
Length = 194
Score = 114 bits (285), Expect = 5e-25
Identities = 54/78 (69%), Positives = 65/78 (83%)
Frame = -2
Query: 478 APQPDDPPDAVVAQPYLKDYPTFVNPARYWTESFAKASSRGIEDKVQKLVEMGFPEAQVR 299
AP+PDDP DAVVAQ YL+++ TFV ARYWTE+FAK S+ +DK+QKLVEMGFPEAQVR
Sbjct: 115 APEPDDPQDAVVAQQYLREHQTFVGTARYWTETFAKTSTLAADDKIQKLVEMGFPEAQVR 174
Query: 298 SLLESVGGDENLALARLL 245
S LE+ G DEN+AL +LL
Sbjct: 175 STLEANGWDENMALEKLL 192
>ref|NP_199900.1| ubiquitin-conjugating enzyme-like protein; protein id: At5g50870.1,
supported by cDNA: gi_17644162, supported by cDNA:
gi_20465330 [Arabidopsis thaliana]
gi|9758234|dbj|BAB08733.1| ubiquitin-conjugating
enzyme-like protein [Arabidopsis thaliana]
gi|17644163|gb|AAL38779.1| putative
ubiquitin-conjugating enzyme [Arabidopsis thaliana]
gi|20465331|gb|AAM20069.1| putative
ubiquitin-conjugating enzyme protein [Arabidopsis
thaliana]
Length = 192
Score = 104 bits (259), Expect = 6e-22
Identities = 51/77 (66%), Positives = 64/77 (82%)
Frame = -2
Query: 478 APQPDDPPDAVVAQPYLKDYPTFVNPARYWTESFAKASSRGIEDKVQKLVEMGFPEAQVR 299
AP+P DP DAVVA+ Y+K+Y FV+ ARYWTE+FAK SS +E+KV++LVEMGF +AQVR
Sbjct: 115 APEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFAKKSS--LEEKVKRLVEMGFGDAQVR 172
Query: 298 SLLESVGGDENLALARL 248
S +ES GGDENLAL +L
Sbjct: 173 SAIESSGGDENLALEKL 189
>ref|NP_705446.1| ubiquitin-conjugating enzyme, putative [Plasmodium falciparum 3D7]
gi|23615691|emb|CAD52683.1| ubiquitin-conjugating
enzyme, putative [Plasmodium falciparum 3D7]
Length = 202
Score = 62.0 bits (149), Expect = 3e-09
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = -2
Query: 475 PQPDDPPDAVVAQPYLKDYPTFVNPARYWTESFAKASS-RGIEDKVQKLVEMGFPEAQVR 299
PQPDDP DA VA+ Y ++Y ++ A WT++FA ED ++K+ EMGF E Q +
Sbjct: 122 PQPDDPQDAEVAKMYKENYSLYLKTASVWTKTFATVPKLEPREDIIKKITEMGFSEDQAK 181
Query: 298 SLLESVGGDENLALARLL 245
L +E LAL LL
Sbjct: 182 KALIKANWNETLALNTLL 199
>gb|EAA20958.1| ubiquitin conjugating enzyme [Plasmodium yoelii yoelii]
Length = 202
Score = 59.7 bits (143), Expect = 2e-08
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = -2
Query: 475 PQPDDPPDAVVAQPYLKDYPTFVNPARYWTESFAKA-SSRGIEDKVQKLVEMGFPEAQVR 299
PQPDDP DA VA+ Y +++ FV A WT++FA E ++K+ EMGF E Q +
Sbjct: 122 PQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKEEPREVIIKKITEMGFSEDQAK 181
Query: 298 SLLESVGGDENLALARLL 245
+ L +E LAL LL
Sbjct: 182 NALIKANWNETLALNTLL 199
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,672,205
Number of Sequences: 1393205
Number of extensions: 8422387
Number of successful extensions: 25900
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 25304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25878
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
