KMC016842A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC016842A_C01 KMC016842A_c01
tacttatccctgGAGAAGAGAACAGTGGTAAATTTACGCAAGAGTTTAGATTGTGAACTC
ACCAAGGGCATGTGAGAATCAATTGTAAACTATTAAGCTCAAATCTGCTATCTGCTACAA
TAATGATCATTTGGTTTGGTTTTCTCTGAAAGATTAAACCTCGTTCATGCTGTATCATGA
TTCTGAGGATATCTGATGCATGTCATTGCCAGATGTTGAGGGAAAGCTATGCGTGAGCCC
TGTTGAATTGTCTGTTTGGCTTGTGCTCAAACTGTGATTTTCCTTGTGTTGACGGATGTC
CCTCATGGCTTTAAACCTTAAATCTTCACGGAAAACACTTGTTTCTGGGTCAACATCTGG
AATGCTTATTCTTCCTTCAAGCATGTTTACAACCTCAGACATTGTAGGCCTAAGTGATGG
TGATGTATTTGTGCACAGGAGAGCTACTTTCAGCATATTTnGTGCTTCAGTTGGGTTTAC
CTTTGATCCCAAGCTTTCATCAACCAATTTCAC


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC016842A_C01 KMC016842A_c01
         (513 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK32925.1|AF367338_1 At1g29720/T3M22_6 [Arabidopsis thaliana...    83  2e-15
gb|AAG10622.1|AC008030_22 Putative  receptor-like serine/threoni...    83  2e-15
pir||F86420 probable receptor-like serine/threonine kinase - Ara...    83  2e-15
ref|NP_564335.1| expressed protein; protein id: At1g29720.1 [Ara...    83  2e-15
gb|AAL73330.1| putative receptor-like protein kinase RLPK1 [Glyc...    78  5e-14

>gb|AAK32925.1|AF367338_1 At1g29720/T3M22_6 [Arabidopsis thaliana] gi|21360553|gb|AAM47473.1|
           At1g29720/T3M22_6 [Arabidopsis thaliana]
          Length = 300

 Score = 83.2 bits (204), Expect = 2e-15
 Identities = 48/112 (42%), Positives = 67/112 (58%)
 Frame = -1

Query: 513 VKLVDESLGSKVNPTEAXNMLKVALLCTNTSPSLRPTMSEVVNMLEGRISIPDVDPETSV 334
           +++VD  L  + N +EA  M+KVAL+CTN+SPSLRPTMSE V MLEG I I  V  +  +
Sbjct: 179 LEIVDRMLEGEFNRSEAVRMIKVALVCTNSSPSLRPTMSEAVKMLEGEIEITQVMSDPGI 238

Query: 333 FREDLRFKAMRDIRQHKENHSLSTSQTDNSTGLTHSFPSTSGNDMHQISSES 178
           +  D     +RDI  H  + S ++  TD +T    S  S SG D++ +  ES
Sbjct: 239 YGHDWSISKLRDIDTH--SSSSTSGVTDQTTTTMKS--SVSGCDLYPLYPES 286

>gb|AAG10622.1|AC008030_22 Putative  receptor-like serine/threonine kinase - partial protein
            [Arabidopsis thaliana]
          Length = 1013

 Score = 83.2 bits (204), Expect = 2e-15
 Identities = 48/112 (42%), Positives = 67/112 (58%)
 Frame = -1

Query: 513  VKLVDESLGSKVNPTEAXNMLKVALLCTNTSPSLRPTMSEVVNMLEGRISIPDVDPETSV 334
            +++VD  L  + N +EA  M+KVAL+CTN+SPSLRPTMSE V MLEG I I  V  +  +
Sbjct: 896  LEIVDRMLEGEFNRSEAVRMIKVALVCTNSSPSLRPTMSEAVKMLEGEIEITQVMSDPGI 955

Query: 333  FREDLRFKAMRDIRQHKENHSLSTSQTDNSTGLTHSFPSTSGNDMHQISSES 178
            +  D     +RDI  H  + S ++  TD +T    S  S SG D++ +  ES
Sbjct: 956  YGHDWSISKLRDIDTH--SSSSTSGVTDQTTTTMKS--SVSGCDLYPLYPES 1003

>pir||F86420 probable receptor-like serine/threonine kinase - Arabidopsis thaliana
            gi|12321407|gb|AAG50772.1|AC079288_1 receptor-like
            serine/threonine kinase (RFK1), putative [Arabidopsis
            thaliana]
          Length = 920

 Score = 83.2 bits (204), Expect = 2e-15
 Identities = 48/112 (42%), Positives = 67/112 (58%)
 Frame = -1

Query: 513  VKLVDESLGSKVNPTEAXNMLKVALLCTNTSPSLRPTMSEVVNMLEGRISIPDVDPETSV 334
            +++VD  L  + N +EA  M+KVAL+CTN+SPSLRPTMSE V MLEG I I  V  +  +
Sbjct: 799  LEIVDRMLEGEFNRSEAVRMIKVALVCTNSSPSLRPTMSEAVKMLEGEIEITQVMSDPGI 858

Query: 333  FREDLRFKAMRDIRQHKENHSLSTSQTDNSTGLTHSFPSTSGNDMHQISSES 178
            +  D     +RDI  H  + S ++  TD +T    S  S SG D++ +  ES
Sbjct: 859  YGHDWSISKLRDIDTH--SSSSTSGVTDQTTTTMKS--SVSGCDLYPLYPES 906

>ref|NP_564335.1| expressed protein; protein id: At1g29720.1 [Arabidopsis thaliana]
          Length = 428

 Score = 83.2 bits (204), Expect = 2e-15
 Identities = 48/112 (42%), Positives = 67/112 (58%)
 Frame = -1

Query: 513 VKLVDESLGSKVNPTEAXNMLKVALLCTNTSPSLRPTMSEVVNMLEGRISIPDVDPETSV 334
           +++VD  L  + N +EA  M+KVAL+CTN+SPSLRPTMSE V MLEG I I  V  +  +
Sbjct: 307 LEIVDRMLEGEFNRSEAVRMIKVALVCTNSSPSLRPTMSEAVKMLEGEIEITQVMSDPGI 366

Query: 333 FREDLRFKAMRDIRQHKENHSLSTSQTDNSTGLTHSFPSTSGNDMHQISSES 178
           +  D     +RDI  H  + S ++  TD +T    S  S SG D++ +  ES
Sbjct: 367 YGHDWSISKLRDIDTH--SSSSTSGVTDQTTTTMKS--SVSGCDLYPLYPES 414

>gb|AAL73330.1| putative receptor-like protein kinase RLPK1 [Glycine max]
          Length = 225

 Score = 78.2 bits (191), Expect = 5e-14
 Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
 Frame = -1

Query: 513 VKLVDESLGSKVNPTEAXNMLKVALLCTNTSPSLRPTMSEVVNMLEGR--ISIPDVDPET 340
           ++LVD SLGSK +  EA  ML++ALLCTN SP+LRP+MS VV+MLEG+  I  P +    
Sbjct: 99  LELVDPSLGSKYSSEEAMRMLQLALLCTNPSPTLRPSMSSVVSMLEGKTPIQAPIIKRSD 158

Query: 339 SVFREDLRFKAMRDIRQHKENHSLSTSQTDN 247
           SV  ED+RFKA   + Q  + H  S    D+
Sbjct: 159 SV--EDVRFKAFEMLSQDSQTHVSSAFSQDS 187

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,469,237
Number of Sequences: 1393205
Number of extensions: 8146367
Number of successful extensions: 18594
Number of sequences better than 10.0: 643
Number of HSP's better than 10.0 without gapping: 18144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18579
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPDL027h05_f BP053700 1 498
2 SPDL062a09_f BP055838 13 513




Lotus japonicus
Kazusa DNA Research Institute