KMC016842A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC016842A_C01 KMC016842A_c01
tacttatccctgGAGAAGAGAACAGTGGTAAATTTACGCAAGAGTTTAGATTGTGAACTC
ACCAAGGGCATGTGAGAATCAATTGTAAACTATTAAGCTCAAATCTGCTATCTGCTACAA
TAATGATCATTTGGTTTGGTTTTCTCTGAAAGATTAAACCTCGTTCATGCTGTATCATGA
TTCTGAGGATATCTGATGCATGTCATTGCCAGATGTTGAGGGAAAGCTATGCGTGAGCCC
TGTTGAATTGTCTGTTTGGCTTGTGCTCAAACTGTGATTTTCCTTGTGTTGACGGATGTC
CCTCATGGCTTTAAACCTTAAATCTTCACGGAAAACACTTGTTTCTGGGTCAACATCTGG
AATGCTTATTCTTCCTTCAAGCATGTTTACAACCTCAGACATTGTAGGCCTAAGTGATGG
TGATGTATTTGTGCACAGGAGAGCTACTTTCAGCATATTTnGTGCTTCAGTTGGGTTTAC
CTTTGATCCCAAGCTTTCATCAACCAATTTCAC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016842A_C01 KMC016842A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK32925.1|AF367338_1 At1g29720/T3M22_6 [Arabidopsis thaliana... 83 2e-15
gb|AAG10622.1|AC008030_22 Putative receptor-like serine/threoni... 83 2e-15
pir||F86420 probable receptor-like serine/threonine kinase - Ara... 83 2e-15
ref|NP_564335.1| expressed protein; protein id: At1g29720.1 [Ara... 83 2e-15
gb|AAL73330.1| putative receptor-like protein kinase RLPK1 [Glyc... 78 5e-14
>gb|AAK32925.1|AF367338_1 At1g29720/T3M22_6 [Arabidopsis thaliana] gi|21360553|gb|AAM47473.1|
At1g29720/T3M22_6 [Arabidopsis thaliana]
Length = 300
Score = 83.2 bits (204), Expect = 2e-15
Identities = 48/112 (42%), Positives = 67/112 (58%)
Frame = -1
Query: 513 VKLVDESLGSKVNPTEAXNMLKVALLCTNTSPSLRPTMSEVVNMLEGRISIPDVDPETSV 334
+++VD L + N +EA M+KVAL+CTN+SPSLRPTMSE V MLEG I I V + +
Sbjct: 179 LEIVDRMLEGEFNRSEAVRMIKVALVCTNSSPSLRPTMSEAVKMLEGEIEITQVMSDPGI 238
Query: 333 FREDLRFKAMRDIRQHKENHSLSTSQTDNSTGLTHSFPSTSGNDMHQISSES 178
+ D +RDI H + S ++ TD +T S S SG D++ + ES
Sbjct: 239 YGHDWSISKLRDIDTH--SSSSTSGVTDQTTTTMKS--SVSGCDLYPLYPES 286
>gb|AAG10622.1|AC008030_22 Putative receptor-like serine/threonine kinase - partial protein
[Arabidopsis thaliana]
Length = 1013
Score = 83.2 bits (204), Expect = 2e-15
Identities = 48/112 (42%), Positives = 67/112 (58%)
Frame = -1
Query: 513 VKLVDESLGSKVNPTEAXNMLKVALLCTNTSPSLRPTMSEVVNMLEGRISIPDVDPETSV 334
+++VD L + N +EA M+KVAL+CTN+SPSLRPTMSE V MLEG I I V + +
Sbjct: 896 LEIVDRMLEGEFNRSEAVRMIKVALVCTNSSPSLRPTMSEAVKMLEGEIEITQVMSDPGI 955
Query: 333 FREDLRFKAMRDIRQHKENHSLSTSQTDNSTGLTHSFPSTSGNDMHQISSES 178
+ D +RDI H + S ++ TD +T S S SG D++ + ES
Sbjct: 956 YGHDWSISKLRDIDTH--SSSSTSGVTDQTTTTMKS--SVSGCDLYPLYPES 1003
>pir||F86420 probable receptor-like serine/threonine kinase - Arabidopsis thaliana
gi|12321407|gb|AAG50772.1|AC079288_1 receptor-like
serine/threonine kinase (RFK1), putative [Arabidopsis
thaliana]
Length = 920
Score = 83.2 bits (204), Expect = 2e-15
Identities = 48/112 (42%), Positives = 67/112 (58%)
Frame = -1
Query: 513 VKLVDESLGSKVNPTEAXNMLKVALLCTNTSPSLRPTMSEVVNMLEGRISIPDVDPETSV 334
+++VD L + N +EA M+KVAL+CTN+SPSLRPTMSE V MLEG I I V + +
Sbjct: 799 LEIVDRMLEGEFNRSEAVRMIKVALVCTNSSPSLRPTMSEAVKMLEGEIEITQVMSDPGI 858
Query: 333 FREDLRFKAMRDIRQHKENHSLSTSQTDNSTGLTHSFPSTSGNDMHQISSES 178
+ D +RDI H + S ++ TD +T S S SG D++ + ES
Sbjct: 859 YGHDWSISKLRDIDTH--SSSSTSGVTDQTTTTMKS--SVSGCDLYPLYPES 906
>ref|NP_564335.1| expressed protein; protein id: At1g29720.1 [Arabidopsis thaliana]
Length = 428
Score = 83.2 bits (204), Expect = 2e-15
Identities = 48/112 (42%), Positives = 67/112 (58%)
Frame = -1
Query: 513 VKLVDESLGSKVNPTEAXNMLKVALLCTNTSPSLRPTMSEVVNMLEGRISIPDVDPETSV 334
+++VD L + N +EA M+KVAL+CTN+SPSLRPTMSE V MLEG I I V + +
Sbjct: 307 LEIVDRMLEGEFNRSEAVRMIKVALVCTNSSPSLRPTMSEAVKMLEGEIEITQVMSDPGI 366
Query: 333 FREDLRFKAMRDIRQHKENHSLSTSQTDNSTGLTHSFPSTSGNDMHQISSES 178
+ D +RDI H + S ++ TD +T S S SG D++ + ES
Sbjct: 367 YGHDWSISKLRDIDTH--SSSSTSGVTDQTTTTMKS--SVSGCDLYPLYPES 414
>gb|AAL73330.1| putative receptor-like protein kinase RLPK1 [Glycine max]
Length = 225
Score = 78.2 bits (191), Expect = 5e-14
Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Frame = -1
Query: 513 VKLVDESLGSKVNPTEAXNMLKVALLCTNTSPSLRPTMSEVVNMLEGR--ISIPDVDPET 340
++LVD SLGSK + EA ML++ALLCTN SP+LRP+MS VV+MLEG+ I P +
Sbjct: 99 LELVDPSLGSKYSSEEAMRMLQLALLCTNPSPTLRPSMSSVVSMLEGKTPIQAPIIKRSD 158
Query: 339 SVFREDLRFKAMRDIRQHKENHSLSTSQTDN 247
SV ED+RFKA + Q + H S D+
Sbjct: 159 SV--EDVRFKAFEMLSQDSQTHVSSAFSQDS 187
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,469,237
Number of Sequences: 1393205
Number of extensions: 8146367
Number of successful extensions: 18594
Number of sequences better than 10.0: 643
Number of HSP's better than 10.0 without gapping: 18144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18579
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
SPDL027h05_f |
BP053700 |
1 |
498 |
2 |
SPDL062a09_f |
BP055838 |
13 |
513 |
|
Lotus japonicus
Kazusa DNA Research Institute