Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016834A_C01 KMC016834A_c01
(680 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_388457.1| similar to hypothetical proteins [Bacillus subt... 35 1.2
gb|EAA16139.1| RNA helicase [Plasmodium yoelii yoelii] 32 6.2
pir||T13860 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 32 6.2
dbj|BAC23282.1| NADH dehydrogenase subunit 2 [Lophius litulon] 32 6.2
ref|NP_008524.1|ND2_15046 NADH dehydrogenase subunit 2 [Squalus ... 32 6.2
>ref|NP_388457.1| similar to hypothetical proteins [Bacillus subtilis]
gi|7474543|pir||D69784 hypothetical protein ydhH -
Bacillus subtilis gi|1945092|dbj|BAA19700.1| secretory
[Bacillus subtilis] gi|2632889|emb|CAB12395.1| ydhH
[Bacillus subtilis subsp. subtilis str. 168]
Length = 165
Score = 34.7 bits (78), Expect = 1.2
Identities = 21/48 (43%), Positives = 25/48 (51%)
Frame = +2
Query: 254 SHYPLPLFH*IAPLTIISCGPIFFGFHHSHHVSSEV*TWKCLSKGKSW 397
SHY PL A L I C IFF +H HHV E W+ SK ++W
Sbjct: 3 SHYKYPLIF-TAFLLIAFC-LIFFSYHLIHHVRLEYPNWQGESKDQNW 48
>gb|EAA16139.1| RNA helicase [Plasmodium yoelii yoelii]
Length = 832
Score = 32.3 bits (72), Expect = 6.2
Identities = 25/93 (26%), Positives = 43/93 (45%), Gaps = 7/93 (7%)
Frame = -1
Query: 449 LSRLDFPSRQKFCIQFLPTIF----PLINTSMFRLQSSHDVSDGIQRKLDHRKLL---LV 291
+ +++ PS+ K+ FL F L N + L+ +D + + D KL+ +
Sbjct: 484 ICKINTPSKYKYVPYFLNIFFFNQKGLSNKNQSMLERQKQFNDIDKEEYDSNKLISDYMN 543
Query: 290 VQSSEKVEEGSERRKCL*FVPSLDEVVCFVETA 192
+S +E+G + KC+ F S DEV E A
Sbjct: 544 KNTSTIIEDGDKINKCIIFSNSKDEVEKLYENA 576
>pir||T13860 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - white shark
mitochondrion (fragment) gi|2257788|gb|AAB63124.1| NADH
dehydrogenase subunit 2 [Carcharodon carcharias]
Length = 346
Score = 32.3 bits (72), Expect = 6.2
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 149 VQLALKSCMAFSTFMLFPQNKQPHLNSVQITSISFSHYPLPLFH*IAPLTIISCG--PIF 322
+ L L M +TF+LF LNS +I SIS S PL IA +T++S G P
Sbjct: 203 LNLILYIIMTSTTFLLFKT-----LNSTKINSISSSSSKXPLLSIIALMTLLSLGGLPPL 257
Query: 323 FGF 331
GF
Sbjct: 258 SGF 260
>dbj|BAC23282.1| NADH dehydrogenase subunit 2 [Lophius litulon]
Length = 348
Score = 32.3 bits (72), Expect = 6.2
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +2
Query: 155 LALKSCMAFSTFMLFPQNKQPHLNSVQITSISFSHYPLPLFH*IAPLTIISCG--PIFFG 328
LAL + FSTF+ F + NS+ I S++ S LPL + PL ++S G P G
Sbjct: 204 LALYFVLTFSTFITFKLS-----NSLNINSLAASWTKLPLLAALIPLIMLSLGGLPPLTG 258
Query: 329 FHHSHHVSSEV 361
F + SE+
Sbjct: 259 FMPKWLILSEL 269
>ref|NP_008524.1|ND2_15046 NADH dehydrogenase subunit 2 [Squalus acanthias]
gi|6647630|sp|Q9ZZ53|NU2M_SQUAC NADH-ubiquinone
oxidoreductase chain 2 gi|7432085|pir||T11535 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - spiny
dogfish mitochondrion gi|4186097|emb|CAA77050.1| NADH
dehydrogenase subunit 2 [Squalus acanthias]
Length = 348
Score = 32.3 bits (72), Expect = 6.2
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 149 VQLALKSCMAFSTFMLFPQNKQPHLNSVQITSISFSHYPLPLFH*IAPLTIISCG--PIF 322
+ LAL M +TF+LF NS +I SI+ S PL IA +T++S G P
Sbjct: 203 LNLALYIIMTLTTFLLFKL-----FNSTKINSIAISTIKSPLLSIIALITLLSLGGLPPL 257
Query: 323 FGF 331
GF
Sbjct: 258 SGF 260
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 623,794,467
Number of Sequences: 1393205
Number of extensions: 13766079
Number of successful extensions: 27643
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 26871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27637
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
