Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016831A_C01 KMC016831A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196834.1| putative protein; protein id: At5g13300.1 [Arab... 46 4e-04
ref|NP_057550.1| hypothetical protein LOC51239 [Homo sapiens] gi... 38 0.12
ref|NP_201004.1| GCN4-complementing protein - like; protein id: ... 37 0.26
gb|AAH31303.1| Similar to hypothetical protein LOC51239 [Homo sa... 36 0.34
ref|NP_493429.1| Predicted CDS, ankyrin repeat containing protei... 35 0.58
>ref|NP_196834.1| putative protein; protein id: At5g13300.1 [Arabidopsis thaliana]
gi|11358303|pir||T48577 hypothetical protein T31B5.120 -
Arabidopsis thaliana gi|7529285|emb|CAB86637.1| putative
protein [Arabidopsis thaliana]
Length = 750
Score = 45.8 bits (107), Expect = 4e-04
Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 3/45 (6%)
Frame = -2
Query: 606 LARLLLSRGXDPRAVDDQGRTPIELAAESNADDH---APLADSNG 481
+ARLLL+RG DP A++ +G+T +++AAESN D A L+D+NG
Sbjct: 700 IARLLLTRGADPEAMNREGKTALDIAAESNFTDPEVLALLSDTNG 744
>ref|NP_057550.1| hypothetical protein LOC51239 [Homo sapiens]
gi|7106790|gb|AAF36120.1|AF151034_1 HSPC200 [Homo
sapiens]
Length = 175
Score = 37.7 bits (86), Expect = 0.12
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = -2
Query: 606 LARLLLSRGXDPRAVDDQGRTPIELAAESNADD 508
+ARLLLS G +PR VDD G T + AAE D
Sbjct: 112 IARLLLSHGSNPRVVDDDGMTSLHKAAERGHGD 144
>ref|NP_201004.1| GCN4-complementing protein - like; protein id: At5g61980.1
[Arabidopsis thaliana]
Length = 850
Score = 36.6 bits (83), Expect = 0.26
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = -2
Query: 606 LARLLLSRGXDPRAVDDQGRTPIELAAESNADDHAPLA 493
+ARLLL RG DP AVD P++ A++++ +D +A
Sbjct: 806 IARLLLMRGGDPNAVDKDSNIPVKYASQTDLNDSELIA 843
>gb|AAH31303.1| Similar to hypothetical protein LOC51239 [Homo sapiens]
Length = 183
Score = 36.2 bits (82), Expect = 0.34
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = -2
Query: 606 LARLLLSRGXDPRAVDDQGRTPIELAAESNADD 508
+ RLLLS G +PR VDD G T + AAE D
Sbjct: 112 ITRLLLSHGSNPRVVDDDGMTSLHKAAERGHGD 144
>ref|NP_493429.1| Predicted CDS, ankyrin repeat containing protein [Caenorhabditis
elegans] gi|11065673|emb|CAC14420.1| Hypothetical protein
Y71A12B.4 [Caenorhabditis elegans]
Length = 1913
Score = 35.4 bits (80), Expect = 0.58
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = -2
Query: 606 LARLLLSRGXDPRAVDDQGRTPIELAAESNADD 508
+++ LL+ G +P A DD+G+TP+ LAAE++ D
Sbjct: 955 VSQTLLALGANPNARDDKGQTPLHLAAENDFPD 987
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,359,152
Number of Sequences: 1393205
Number of extensions: 12298603
Number of successful extensions: 32114
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 30174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32092
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
