Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016828A_C01 KMC016828A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175627.1| HD-Zip transcription factor; protein id: At1g52... 266 1e-70
emb|CAC84276.1| HD-Zip protein [Zinnia elegans] 243 1e-63
dbj|BAC22512.1| homeobox leucine-zipper protein [Zinnia elegans] 227 1e-58
ref|NP_195014.1| HD-Zip transcription factor, Athb-8; protein id... 224 5e-58
dbj|BAB92205.1| putative HD-zip transcription factor [Oryza sati... 206 1e-52
>ref|NP_175627.1| HD-Zip transcription factor; protein id: At1g52150.1, supported by
cDNA: gi_16974580 [Arabidopsis thaliana]
gi|25405530|pir||E96561 hypothetical protein F5F19.21
[imported] - Arabidopsis thaliana
gi|4220462|gb|AAD12689.1| Strong similarity to gb|Z50851
HD-zip (athb-8) gene from Arabidopsis thaliana containing
Homeobox PF|00046 and bZIP PF|00170 domains
gi|16974581|gb|AAL31186.1| At1g52150/F5F19_21
[Arabidopsis thaliana] gi|19578319|emb|CAD28400.1|
homeodomain-leucine zipper protein [Arabidopsis thaliana]
Length = 836
Score = 266 bits (680), Expect = 1e-70
Identities = 121/143 (84%), Positives = 136/143 (94%)
Frame = -1
Query: 591 LARWISHSYRCYLGVELLKSNXEGNESLLKSLWHHSDAILCCTLKALPVFTFAHQAGLDM 412
LARWI SYR Y+GVELLKSN +GNES+LK+LWHH+DAI+CC++KALPVFTFA+QAGLDM
Sbjct: 694 LARWICQSYRGYMGVELLKSNSDGNESILKNLWHHTDAIICCSMKALPVFTFANQAGLDM 753
Query: 411 LETTLVALQDITLEKIFDDQGRKILCSEFPQIIQQGFACLQGGLCLSSMGRPISYERVVA 232
LETTLVALQDI+LEKIFDD GRK LCSEFPQI+QQGFACLQGG+CLSSMGRP+SYER VA
Sbjct: 754 LETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVA 813
Query: 231 WKVLNEEENAHCICFMFVNWSFV 163
WKVLNEEENAHCICF+F+NWSFV
Sbjct: 814 WKVLNEEENAHCICFVFINWSFV 836
>emb|CAC84276.1| HD-Zip protein [Zinnia elegans]
Length = 838
Score = 243 bits (620), Expect = 1e-63
Identities = 108/143 (75%), Positives = 128/143 (88%)
Frame = -1
Query: 591 LARWISHSYRCYLGVELLKSNXEGNESLLKSLWHHSDAILCCTLKALPVFTFAHQAGLDM 412
LARWISHSYRCYLG ELL+ EG++S+LKS+WHHSDAI+CC+LK +PVF FA+Q GLDM
Sbjct: 696 LARWISHSYRCYLGAELLEGVGEGSDSILKSMWHHSDAIVCCSLKGMPVFPFANQGGLDM 755
Query: 411 LETTLVALQDITLEKIFDDQGRKILCSEFPQIIQQGFACLQGGLCLSSMGRPISYERVVA 232
LE LVALQDI+L+KI D+ GRK+L SEFPQI+QQGFACLQGG+C+SSMGRP+SYER VA
Sbjct: 756 LEPPLVALQDISLKKILDENGRKVLWSEFPQIMQQGFACLQGGICVSSMGRPVSYERAVA 815
Query: 231 WKVLNEEENAHCICFMFVNWSFV 163
WKV+NE+E HCICFMF+NWSFV
Sbjct: 816 WKVVNEDETPHCICFMFINWSFV 838
>dbj|BAC22512.1| homeobox leucine-zipper protein [Zinnia elegans]
Length = 836
Score = 227 bits (578), Expect = 1e-58
Identities = 103/143 (72%), Positives = 123/143 (85%)
Frame = -1
Query: 591 LARWISHSYRCYLGVELLKSNXEGNESLLKSLWHHSDAILCCTLKALPVFTFAHQAGLDM 412
LARWI S+RC+LG +L K E ++++LK+LWHHSDAI+CC+LKALP FTFA+QAGLDM
Sbjct: 694 LARWICQSFRCFLGEDLFKMVDERSDTMLKTLWHHSDAIMCCSLKALPDFTFANQAGLDM 753
Query: 411 LETTLVALQDITLEKIFDDQGRKILCSEFPQIIQQGFACLQGGLCLSSMGRPISYERVVA 232
LETTLV+LQDITL+KIFD GR +CSE PQI+QQGFAC G+CL+SMGRP+SYER VA
Sbjct: 754 LETTLVSLQDITLDKIFDRGGRTSICSELPQILQQGFACFPSGVCLTSMGRPVSYERAVA 813
Query: 231 WKVLNEEENAHCICFMFVNWSFV 163
WKVLN+EEN HCI F+FVNWSFV
Sbjct: 814 WKVLNDEENPHCIAFVFVNWSFV 836
>ref|NP_195014.1| HD-Zip transcription factor, Athb-8; protein id: At4g32880.1,
supported by cDNA: gi_20466329 [Arabidopsis thaliana]
gi|7488380|pir||T10695 transcription factor HD-zip -
Arabidopsis thaliana gi|1149569|emb|CAA90703.1| HD-zip
[Arabidopsis thaliana] gi|7270235|emb|CAB80005.1| HD-zip
transcription factor (athb-8) [Arabidopsis thaliana]
gi|20152536|emb|CAD29660.1| homeodomain-leucine zipper
protein 8 [Arabidopsis thaliana]
gi|20466330|gb|AAM20482.1| HD-zip transcription factor
(athb-8) [Arabidopsis thaliana]
Length = 833
Score = 224 bits (572), Expect = 5e-58
Identities = 105/145 (72%), Positives = 126/145 (86%), Gaps = 2/145 (1%)
Frame = -1
Query: 591 LARWISHSYRCYLGVELLKSNXEGNESLLKSLWHHSDAILCCTLKAL-PVFTFAHQAGLD 415
LARWISHSYRCYLGV+LLK + LLKSLWHH DA++CC+LKAL PVFTFA+QAGLD
Sbjct: 692 LARWISHSYRCYLGVDLLKPH---GTDLLKSLWHHPDAVMCCSLKALSPVFTFANQAGLD 748
Query: 414 MLETTLVALQDITLEKIFDDQ-GRKILCSEFPQIIQQGFACLQGGLCLSSMGRPISYERV 238
MLETTLVALQDITL+KIFD+ G+K L SEFPQI+QQGF C+ GG+C+SSMGR ++YE+
Sbjct: 749 MLETTLVALQDITLDKIFDNNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKA 808
Query: 237 VAWKVLNEEENAHCICFMFVNWSFV 163
V WKVLN++E+ HCICFMF+NWSF+
Sbjct: 809 VGWKVLNDDEDPHCICFMFLNWSFI 833
>dbj|BAB92205.1| putative HD-zip transcription factor [Oryza sativa (japonica
cultivar-group)]
Length = 898
Score = 206 bits (525), Expect = 1e-52
Identities = 95/146 (65%), Positives = 121/146 (82%), Gaps = 3/146 (2%)
Frame = -1
Query: 591 LARWISHSYRCYLGVELLKS--NXEGNESLLKSLWHHSDAILCCTLKALPVFTFAHQAGL 418
L RWI SYR + G EL+KS NES+LK++WHH AILCC+LKA+PVFTFA+Q+GL
Sbjct: 753 LPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAMPVFTFANQSGL 812
Query: 417 DMLETTLVALQDITLEKIFDDQGRKILCSEFPQIIQQGFACLQGGLCLSSMGRPISYERV 238
DMLETTLVALQD+TLEK+FDDQGRK LC+E P I++QG AC++GG+C+SS+GR SYE+
Sbjct: 813 DMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSSVGRAASYEKA 872
Query: 237 VAWKVLN-EEENAHCICFMFVNWSFV 163
VAWKV++ + AHCICFMF+NW+F+
Sbjct: 873 VAWKVVDGDGGGAHCICFMFINWTFL 898
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,826,996
Number of Sequences: 1393205
Number of extensions: 9823646
Number of successful extensions: 20114
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 19592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20090
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
