Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016822A_C01 KMC016822A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181442.2| unknown protein; protein id: At2g39090.1, suppo... 39 0.048
pir||A84813 hypothetical protein At2g39090 [imported] - Arabidop... 39 0.048
ref|NP_176964.1| putative heat shock transcription factor; prote... 35 0.53
ref|NP_693885.1| oligopeptide ABC transporter ATP-binding protei... 32 4.5
dbj|BAC20167.1| maturase K [Akebia quinata] 32 5.9
>ref|NP_181442.2| unknown protein; protein id: At2g39090.1, supported by cDNA:
gi_18252240 [Arabidopsis thaliana]
gi|18252241|gb|AAL61953.1| unknown protein [Arabidopsis
thaliana] gi|27311883|gb|AAO00907.1| unknown protein
[Arabidopsis thaliana]
Length = 558
Score = 38.9 bits (89), Expect = 0.048
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -2
Query: 481 FCSLST*WEMKDEKGALSYVE*SFWIDETHIKDSVLRASL 362
F +LS WE KD + ALSY E S +DE HI +++ +L
Sbjct: 317 FVALSVLWERKDARTALSYAEKSIRVDERHIPGYIMKGNL 356
>pir||A84813 hypothetical protein At2g39090 [imported] - Arabidopsis thaliana
gi|3928093|gb|AAC79619.1| unknown protein [Arabidopsis
thaliana]
Length = 276
Score = 38.9 bits (89), Expect = 0.048
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -2
Query: 481 FCSLST*WEMKDEKGALSYVE*SFWIDETHIKDSVLRASL 362
F +LS WE KD + ALSY E S +DE HI +++ +L
Sbjct: 35 FVALSVLWERKDARTALSYAEKSIRVDERHIPGYIMKGNL 74
>ref|NP_176964.1| putative heat shock transcription factor; protein id: At1g67970.1,
supported by cDNA: gi_20453059 [Arabidopsis thaliana]
gi|11386850|sp|Q9S7U5|HSF5_ARATH Heat shock factor
protein 5 (HSF 5) (Heat shock transcription factor 5)
(HSTF 5) gi|25404691|pir||F96702 hypothetical protein
T23K23.18 [imported] - Arabidopsis thaliana
gi|6624614|emb|CAB63801.1| heat shock factor 5
[Arabidopsis thaliana]
gi|12324064|gb|AAG51992.1|AC012563_2 putative heat shock
transcription factor; 58077-59546 [Arabidopsis thaliana]
gi|20453060|gb|AAM19775.1| At1g67970/T23K23_18
[Arabidopsis thaliana]
Length = 374
Score = 35.4 bits (80), Expect = 0.53
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -2
Query: 583 VRMCMDEKVCPLNNHSPLLLPDLPNDGSWEQ 491
++ C+DE NH PL++PDL +DG+WE+
Sbjct: 266 LKFCLDE------NHVPLIIPDLYDDGAWEK 290
>ref|NP_693885.1| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus
iheyensis HTE831] gi|22778651|dbj|BAC14919.1|
oligopeptide ABC transporter ATP-binding protein
[Oceanobacillus iheyensis]
Length = 338
Score = 32.3 bits (72), Expect = 4.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 517 NLVEEVENDYLVDTPFHPYT 576
N+VEE ++++L D P HPYT
Sbjct: 228 NMVEETQSEHLYDNPLHPYT 247
>dbj|BAC20167.1| maturase K [Akebia quinata]
Length = 405
Score = 32.0 bits (71), Expect = 5.9
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Frame = +3
Query: 30 RKVFKSSVVFSILHSVVPLL----SAVHSVFRLCINISTHLS*INS*HILSIL*IYTIRK 197
+++FKS + SI HS+ P L S +++V + I HL L + T+R
Sbjct: 91 KEIFKSHNLRSI-HSIFPFLEDKFSHLNNVLDILIPYPYHLE----------LLVQTLRC 139
Query: 198 LLNTVHKLAFSSFSPYSLHRW*V-------VGFQVPTTMRHLLLFSSNVLISKCN*LFLF 356
++ H L F Y +W + F R L LF N + KC +F+F
Sbjct: 140 WIHDAHFLHLLRFFLYEYCKWDSLITQKKKIHFFFSKENRRLFLFLYNAHVYKCESIFVF 199
Query: 357 PLNEA 371
L ++
Sbjct: 200 FLKQS 204
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,309,390
Number of Sequences: 1393205
Number of extensions: 9794203
Number of successful extensions: 20851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20844
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
