Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016802A_C01 KMC016802A_c01
(462 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB67881.1| P0031D11.14 [Oryza sativa (japonica cultivar-gro... 39 8e-08
ref|NP_191095.1| putative protein; protein id: At3g55350.1, supp... 38 5e-07
dbj|BAC24862.1| OJ1656_E11.28 [Oryza sativa (japonica cultivar-g... 33 0.065
ref|NP_567144.1| putative protein; protein id: At3g63270.1, supp... 35 0.38
pir||T48116 hypothetical protein F16M2.120 - Arabidopsis thalian... 35 0.38
>dbj|BAB67881.1| P0031D11.14 [Oryza sativa (japonica cultivar-group)]
Length = 396
Score = 38.9 bits (89), Expect(2) = 8e-08
Identities = 14/19 (73%), Positives = 16/19 (83%)
Frame = -2
Query: 461 FEKLQXLPNCCGVVDVTHI 405
FEK+Q LPNCCG +D THI
Sbjct: 161 FEKIQGLPNCCGAIDTTHI 179
Score = 38.1 bits (87), Expect(2) = 8e-08
Identities = 22/60 (36%), Positives = 32/60 (52%), Gaps = 3/60 (5%)
Frame = -3
Query: 412 HTSMCLAST*PHKEVWLDHEKKHSMVHSG---SWI*GSETVTGWPGHLKDWMVFEDSTFH 242
H MC +S P+ VWLD E ++SMV + + + V+GWPG L D + S F+
Sbjct: 178 HILMC-SSAQPNSNVWLDGENRNSMVLQAIVDADMRFRDVVSGWPGSLNDSCILRTSGFY 236
>ref|NP_191095.1| putative protein; protein id: At3g55350.1, supported by cDNA:
37855. [Arabidopsis thaliana] gi|11358194|pir||T47674
hypothetical protein T22E16.10 - Arabidopsis thaliana
gi|7076778|emb|CAB75893.1| putative protein [Arabidopsis
thaliana] gi|21593300|gb|AAM65249.1| unknown
[Arabidopsis thaliana] gi|26449824|dbj|BAC42035.1|
unknown protein [Arabidopsis thaliana]
Length = 406
Score = 38.1 bits (87), Expect(2) = 5e-07
Identities = 13/19 (68%), Positives = 16/19 (83%)
Frame = -2
Query: 461 FEKLQXLPNCCGVVDVTHI 405
FEK+ LPNCCG +D+THI
Sbjct: 174 FEKISGLPNCCGAIDITHI 192
Score = 36.2 bits (82), Expect(2) = 5e-07
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -3
Query: 412 HTSMCLAST*PHKEVWLDHEKKHSMVHSGSW---I*GSETVTGWPGHLKDWMVFEDSTFH 242
H M L + P +VWLD EK SM + + + GWPG L D +V ++S F+
Sbjct: 191 HIVMNLPAVEPSNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLNDDVVLKNSGFY 250
>dbj|BAC24862.1| OJ1656_E11.28 [Oryza sativa (japonica cultivar-group)]
Length = 441
Score = 32.7 bits (73), Expect(2) = 0.065
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 461 FEKLQXLPNCCGVVDVTHI 405
FE LPNCCG +D THI
Sbjct: 215 FEAESGLPNCCGAIDATHI 233
Score = 23.9 bits (50), Expect(2) = 0.065
Identities = 18/52 (34%), Positives = 24/52 (45%), Gaps = 4/52 (7%)
Frame = -3
Query: 373 EVWLDHEKKHSMVHSG---SWI*GSETVTGWPGHLKDWMVFEDS-TFHHPDA 230
E W D K +SM G + + VTGWPG + + + S F H DA
Sbjct: 244 EDWCDPAKNYSMFLQGIVDDEMRFIDIVTGWPGSMMFSRLLKCSGFFKHCDA 295
>ref|NP_567144.1| putative protein; protein id: At3g63270.1, supported by cDNA:
gi_13878074, supported by cDNA: gi_17104744 [Arabidopsis
thaliana] gi|13878075|gb|AAK44115.1|AF370300_1 unknown
protein [Arabidopsis thaliana]
gi|17104745|gb|AAL34261.1| unknown protein [Arabidopsis
thaliana]
Length = 396
Score = 35.0 bits (79), Expect = 0.38
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 461 FEKLQXLPNCCGVVDVTHI 405
FE++ LPNCCG +D THI
Sbjct: 170 FEEMYGLPNCCGAIDTTHI 188
>pir||T48116 hypothetical protein F16M2.120 - Arabidopsis thaliana
gi|7523409|emb|CAB86428.1| putative protein [Arabidopsis
thaliana]
Length = 463
Score = 35.0 bits (79), Expect = 0.38
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 461 FEKLQXLPNCCGVVDVTHI 405
FE++ LPNCCG +D THI
Sbjct: 199 FEEMYGLPNCCGAIDTTHI 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,751,767
Number of Sequences: 1393205
Number of extensions: 9177650
Number of successful extensions: 17520
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17512
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
