Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016800A_C01 KMC016800A_c01
(420 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD51716.1|AF173843_1 Rim20p [Candida albicans] 33 0.83
pir||T13564 microtubule-associated protein homolog - fruit fly ... 31 4.1
ref|NP_524753.2| futsch CG3064-PB gi|22831486|gb|AAF45622.3| CG3... 31 4.1
ref|NP_535448.1| conserved hypothetical protein [Agrobacterium t... 30 5.4
sp|P98175|RBMA_HUMAN RNA-binding protein 10 (RNA binding motif p... 30 5.4
>gb|AAD51716.1|AF173843_1 Rim20p [Candida albicans]
Length = 785
Score = 33.1 bits (74), Expect = 0.83
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Frame = -2
Query: 389 VLTLLLIDQEFRPGYDSINKPDSV*KLSFYYNESILK--------RAILKLDRSPQLCF* 234
+L LID++ DSI +P+++ ++++ ILK +A +LD+ C
Sbjct: 402 MLVKFLIDRDLPSSIDSIQQPENIPDSVIHHSQEILKTGGVDFIDKAFKELDKLKLECNH 461
Query: 233 L----ENRKHKDEPSGPLSRRKEGAFRY---CTFRCVQEQGRKENKSQE 108
L E R D + RRK+G+ R+ T QE +K +K ++
Sbjct: 462 LLQECETRIDLDRSEDDMLRRKQGSTRWTRKSTDDAAQELIKKVDKMKQ 510
>pir||T13564 microtubule-associated protein homolog - fruit fly (Drosophila
melanogaster) gi|3355742|emb|CAA20006.1|
/prediction=(method:''genefinder'', version:''084'',
score:''404.95'')~/match=(desc:''MICROTUBULE-ASSOCIATED
PROTEIN 1B [CONTAINS: LIGHT CHAIN LC1]'', species:''HOMO
SAPIENS (HUMAN)'', ranges:(query:21820..22047,
target:SWISS-PROT::P46821:78..153, score:''83.00''),
(query:22385..22543, target:SWISS-PROT::P46821:231..283,
score:''125.00''), (query:22607..22738,
target:SWISS-PROT::P46821:284..327, score:''129.00''),
(query:22928..23032, target:SWISS-PROT::P46821:407..441,
score:''104.00''), (query:23042..23>
Length = 5327
Score = 30.8 bits (68), Expect = 4.1
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = -3
Query: 337 STNPIRYKSLASITMNLF*KELS*SLTGLPNSVFNSKTESIRMSRRAPFPDEKKERLDTV 158
S P R +S+A + K+ L +SV S I ++P P ++ R ++V
Sbjct: 2872 SKEPSRPESVAESIKHENTKDEESPLGSRRDSVAESIKSDITKGEKSPLPSKEVSRPESV 2931
Query: 157 PLGACRSKDERRTSRRRSVEEAV 89
+G+ KDE+ SRR SV E+V
Sbjct: 2932 -VGSI--KDEKAESRRESVAESV 2951
>ref|NP_524753.2| futsch CG3064-PB gi|22831486|gb|AAF45622.3| CG3064-PB [Drosophila
melanogaster]
Length = 5412
Score = 30.8 bits (68), Expect = 4.1
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = -3
Query: 337 STNPIRYKSLASITMNLF*KELS*SLTGLPNSVFNSKTESIRMSRRAPFPDEKKERLDTV 158
S P R +S+A + K+ L +SV S I ++P P ++ R ++V
Sbjct: 3080 SKEPSRPESVAESIKHENTKDEESPLGSRRDSVAESIKSDITKGEKSPLPSKEVSRPESV 3139
Query: 157 PLGACRSKDERRTSRRRSVEEAV 89
+G+ KDE+ SRR SV E+V
Sbjct: 3140 -VGSI--KDEKAESRRESVAESV 3159
>ref|NP_535448.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58
(U. Washington)] gi|25377541|pir||AF3168 conserved
hypothetical protein Atu5072 [imported] - Agrobacterium
tumefaciens (strain C58, Dupont) plasmid AT
gi|17743498|gb|AAL45764.1| conserved hypothetical
protein [Agrobacterium tumefaciens str. C58 (U.
Washington)]
Length = 396
Score = 30.4 bits (67), Expect = 5.4
Identities = 13/31 (41%), Positives = 20/31 (63%)
Frame = -2
Query: 197 PLSRRKEGAFRYCTFRCVQEQGRKENKSQEK 105
PL+ R +GA+ FRC+Q G+K N S ++
Sbjct: 153 PLTVRADGAWLLPIFRCIQRPGQKWNGSHDR 183
>sp|P98175|RBMA_HUMAN RNA-binding protein 10 (RNA binding motif protein 10) (DXS8237E)
Length = 929
Score = 30.4 bits (67), Expect = 5.4
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = -2
Query: 224 RKHKDEPSGPLSRRKEGAFRYCTFRCVQEQGRKENKSQEKR*RSSSL 84
R+H+ P+GP ++G +R +R Q + +E + +E+ ++S++
Sbjct: 84 RRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEEKASNI 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 332,973,532
Number of Sequences: 1393205
Number of extensions: 6544496
Number of successful extensions: 13263
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 12842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13215
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 6923296128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
