Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016777A_C01 KMC016777A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO51431.1| similar to Dictyostelium discoideum (Slime mold).... 38 0.093
ref|NP_701995.1| hypothetical protein, conserved [Plasmodium fal... 32 3.9
gb|ZP_00019161.1| hypothetical protein [Chloroflexus aurantiacus] 32 3.9
ref|NP_705444.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.1
ref|NP_705202.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.1
>gb|AAO51431.1| similar to Dictyostelium discoideum (Slime mold). Histidine kinase
DhkE
Length = 1216
Score = 37.7 bits (86), Expect = 0.093
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +1
Query: 151 NAHNKQMDFD*NYSPVKRKANQNNRQPTHGPLNSNGSTISRRNHQSENVNIRFILSHYLK 330
N N + + N S ++ N NN + N+N + + N+ +EN ++ FILS +L
Sbjct: 362 NIDNNNSNIENNNSNIENNNNNNNNNNNNNNNNNNNNNNNNNNNNNENKSMDFILSIFL- 420
Query: 331 K*KTPNLPKK 360
+PN KK
Sbjct: 421 --SSPNKSKK 428
>ref|NP_701995.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|23497171|gb|AAN36719.1|AE014817_42 hypothetical
protein, conserved [Plasmodium falciparum 3D7]
Length = 638
Score = 32.3 bits (72), Expect = 3.9
Identities = 27/95 (28%), Positives = 44/95 (45%)
Frame = +1
Query: 22 NMPSYQKKKSLGFSTKSATNKIRIITSSQQKWLIPKIPTK*AANAHNKQMDFD*NYSPVK 201
++ + K S K N ++I+TS+++K T+ + NK D D N + K
Sbjct: 418 SIEDFTKSHKKNCSNKILNNNVKIVTSNKKKETNVNRDTE-TQSCENKNND-DKNKNK-K 474
Query: 202 RKANQNNRQPTHGPLNSNGSTISRRNHQSENVNIR 306
K N+NN+ + N+N S N SE NI+
Sbjct: 475 NKKNKNNKNSKNNK-NNNDDDNSMTNEMSEEDNIK 508
>gb|ZP_00019161.1| hypothetical protein [Chloroflexus aurantiacus]
Length = 843
Score = 32.3 bits (72), Expect = 3.9
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = +2
Query: 365 GRSLLRPYFFKQVPDNSIIRLTLGSHLHINHWINSQYH 478
GRS L Y ++Q D S++ L + + + + WIN QY+
Sbjct: 697 GRSFLHSYTWQQDSDFSVLELIMTAPMIVASWINLQYY 734
>ref|NP_705444.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615689|emb|CAD52681.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 964
Score = 32.0 bits (71), Expect = 5.1
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = +1
Query: 151 NAHNKQMDFD*NYSPVKRKANQNNRQPTHGPLNSNGSTISRRNHQSEN 294
N+H+K+ D N K+ N+NN++ T N+N + S + S N
Sbjct: 260 NSHSKEKDHHDNNKKNKKNKNKNNKKETGNNNNNNNNNKSNSSSSSNN 307
>ref|NP_705202.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615447|emb|CAD52438.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 532
Score = 32.0 bits (71), Expect = 5.1
Identities = 24/91 (26%), Positives = 34/91 (36%)
Frame = +1
Query: 28 PSYQKKKSLGFSTKSATNKIRIITSSQQKWLIPKIPTK*AANAHNKQMDFD*NYSPVKRK 207
PSY +KK S K R ++QK + P K N NK N + K+K
Sbjct: 100 PSYMEKKHFEIEKSSHKIKSRQNEMNEQKSTLMNRPRKSKYNNTNKNNKVKGNLNKKKKK 159
Query: 208 ANQNNRQPTHGPLNSNGSTISRRNHQSENVN 300
+ N G +I N+ + N N
Sbjct: 160 KKNKKKAAQKYYTNKMGYSIGTNNNNNNNNN 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,017,634
Number of Sequences: 1393205
Number of extensions: 10462870
Number of successful extensions: 34495
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 26153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31195
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
