>KMC016776A_C01 KMC016776A_c01
cacCACTTCACTCTCCTTCCTCATGCTCTTGCACCAGGTTGGTCTCACTCTCCACTGAAG
CTAGCTAGCAAGGTCTTTCAGGCACAGAAGTGAAGTGTGTGTTTTGAAGAGAAAAAGGAA
AAAAAAATGTATGGGGATTGCCAAGTCATGTCAGATACTCTCTTCTCGTCACCGATCCAG
AACCCTAACTTCAACTTCATCTCCACCATGCCTTTTCACCCTTTTCCTCCCATGAAAGAA
GAAGATTCTATGTTGGGAGGGAAAGAAGAGATGGAAAGTGGTTCTGAAAGTGAACAAGTT
GAAGACAAGTCCGGGAACGAGCAAGAGATCACTGAACAGCCTAAGAAAAAACGTTATCAC
AGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCG
GATGATAAGCAAAGGATGAAACTAAGCCATGATCTAGGCCTAAAACCACGCCAGGTCAAG
TTCTGGTTCCAAAACCGCCGAACCCAGATGAAGGCACAGCAAGATCGATCAGATAATGTG
ATACTT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC016776A_C01 KMC016776A_c01
         (546 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM97322.1| homeodomain protein GhHOX2 [Gossypium hirsutum]        189  2e-47
ref|NP_199499.1| homeodomain-leucine zipper protein; protein id:...   153  1e-36
emb|CAB96424.1| OCL4 protein [Zea mays]                               144  5e-34
gb|AAL67592.1|AC018929_14 putative outer cell layer homeo domain...   141  4e-33
pir||S71477 homeotic protein, ovule-specific - Phalaenopsis sp g...   136  1e-31

>gb|AAM97322.1| homeodomain protein GhHOX2 [Gossypium hirsutum]
          Length = 775

 Score =  189 bits (479), Expect = 2e-47
 Identities = 103/159 (64%), Positives = 115/159 (71%), Gaps = 14/159 (8%)
 Frame = +1

Query: 112 KKEKKMYGDCQ----------VMSDTLFSSPIQNPNFNFISTMPFHPFPPM---KEEDSM 252
           K+ +KMY DC+          V S TLF+S  QNPNF ++   P  P PPM   +E  S 
Sbjct: 7   KRGRKMYTDCEAISSMGGNMVVSSGTLFTSTFQNPNFTYL---PLEPLPPMITKEENGSS 63

Query: 253 LGGKEEMESGSESEQVEDKSGNEQEITEQP-KKKRYHRHTARQIQEMEALFKECPHPDDK 429
           L GKEEM+SGSESE         QE TEQP KKKRYHRHTA QIQE+EA+FKECPHPDDK
Sbjct: 64  LRGKEEMKSGSESEL--------QETTEQPLKKKRYHRHTAHQIQELEAVFKECPHPDDK 115

Query: 430 QRMKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVIL 546
           QRMKLS +LGLKPRQVKFWFQNRRTQMKAQQDRS+N IL
Sbjct: 116 QRMKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSENGIL 154

>ref|NP_199499.1| homeodomain-leucine zipper protein; protein id: At5g46880.1
           [Arabidopsis thaliana] gi|9759430|dbj|BAB10227.1|
           homeobox protein [Arabidopsis thaliana]
          Length = 783

 Score =  153 bits (387), Expect = 1e-36
 Identities = 95/156 (60%), Positives = 106/156 (67%), Gaps = 29/156 (18%)
 Frame = +1

Query: 166 SSP--IQNPNFNFISTMPFHPFPPM--KEEDSML--------GGKEEMES--------GS 285
           SSP  IQNPNFNFI   PF+ +  +  KEE  M+        G  EEM          GS
Sbjct: 26  SSPGTIQNPNFNFI---PFNSYSSIIPKEEHGMMSMMMMMGDGTVEEMMENGSAGGSFGS 82

Query: 286 ESEQVED-KSGNEQEITE-----QP---KKKRYHRHTARQIQEMEALFKECPHPDDKQRM 438
            SEQ ED K GNE ++ E     QP   KKKRYHRHT RQIQEMEALFKE PHPDDKQR 
Sbjct: 83  GSEQAEDPKFGNESDVNELHDDEQPPPAKKKRYHRHTNRQIQEMEALFKENPHPDDKQRK 142

Query: 439 KLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVIL 546
           +LS +LGLKPRQVKFWFQNRRTQMKAQQDR++NV+L
Sbjct: 143 RLSAELGLKPRQVKFWFQNRRTQMKAQQDRNENVML 178

>emb|CAB96424.1| OCL4 protein [Zea mays]
          Length = 842

 Score =  144 bits (364), Expect = 5e-34
 Identities = 68/96 (70%), Positives = 80/96 (82%), Gaps = 1/96 (1%)
 Frame = +1

Query: 262 KEEMESGSESEQVEDKSGNEQEI-TEQPKKKRYHRHTARQIQEMEALFKECPHPDDKQRM 438
           ++   SG E +   D +G +Q++ T   KKKRYHRHTA QIQ+MEALFKECPHPDDKQR+
Sbjct: 69  QKPQHSGLELQTTADAAGQQQQLATANGKKKRYHRHTAHQIQQMEALFKECPHPDDKQRL 128

Query: 439 KLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVIL 546
           KLS +LGLKPRQVKFWFQNRRTQMKAQQDR+DNV+L
Sbjct: 129 KLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVLL 164

>gb|AAL67592.1|AC018929_14 putative outer cell layer homeo domain protein [Oryza sativa]
          Length = 866

 Score =  141 bits (356), Expect = 4e-33
 Identities = 89/178 (50%), Positives = 107/178 (60%), Gaps = 46/178 (25%)
 Frame = +1

Query: 151 SDTLFSSP-IQNPNF-NFIST---MPFHPFPP-----MKEEDSMLGGKE----------- 267
           +D LF+SP I NP    F+S+   MPFH F       + +E+ ++GG             
Sbjct: 8   ADALFASPLIPNPALAGFMSSSAAMPFHHFSNAAATLIPKEEGLMGGLHVAKDEGMDLEM 67

Query: 268 --EMESGSESEQVE--------------DKSGNEQEI-TEQP--------KKKRYHRHTA 372
             E+  GS S  ++                SG++Q     QP        KKKRYHRHTA
Sbjct: 68  DMELSGGSGSAHLDGLLSFADVDDDHKPQHSGHDQPPDAAQPSGAAGGNAKKKRYHRHTA 127

Query: 373 RQIQEMEALFKECPHPDDKQRMKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVIL 546
            QIQ+MEALFKECPHPDDKQR+KLS +LGLKPRQVKFWFQNRRTQMKAQQDR+DNVIL
Sbjct: 128 HQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVIL 185

>pir||S71477 homeotic protein, ovule-specific - Phalaenopsis sp
           gi|1173622|gb|AAB37230.1| homeobox protein
          Length = 768

 Score =  136 bits (343), Expect = 1e-31
 Identities = 62/100 (62%), Positives = 76/100 (76%)
 Frame = +1

Query: 238 EEDSMLGGKEEMESGSESEQVEDKSGNEQEITEQPKKKRYHRHTARQIQEMEALFKECPH 417
           E D M   +++ ES S S+ +E  SG+E +  ++P+KKRYHRHT  QIQEMEA FKECPH
Sbjct: 54  ESDMMRAREDDFESKSGSDNIEGGSGDEHDPNQRPRKKRYHRHTQHQIQEMEAFFKECPH 113

Query: 418 PDDKQRMKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDN 537
           PDDKQR  LS +LGL+P QVKFWFQN+RTQMK Q DR +N
Sbjct: 114 PDDKQRKALSKELGLEPLQVKFWFQNKRTQMKTQHDRQEN 153

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,722,105
Number of Sequences: 1393205
Number of extensions: 11853689
Number of successful extensions: 49215
Number of sequences better than 10.0: 3848
Number of HSP's better than 10.0 without gapping: 43558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47918
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MFBL042h08_f BP043411 1 512 2 SPDL023b11_f BP053419 4 546

---