Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016759A_C01 KMC016759A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43684.1| unknown protein [Arabidopsis thaliana] gi|289509... 331 4e-90
ref|NP_196861.1| unknown protein; protein id: At5g13570.1 [Arabi... 296 2e-79
gb|AAK98701.1|AC069158_13 Putative ABC transporter [Oryza sativa] 295 3e-79
ref|NP_593780.1| hypothetical PSU1-like protein [Schizosaccharom... 165 3e-40
dbj|BAB30946.1| unnamed protein product [Mus musculus] 159 3e-38
>dbj|BAC43684.1| unknown protein [Arabidopsis thaliana] gi|28950945|gb|AAO63396.1|
At5g13570 [Arabidopsis thaliana]
Length = 373
Score = 331 bits (848), Expect = 4e-90
Identities = 156/187 (83%), Positives = 173/187 (92%)
Frame = +3
Query: 3 LVEYAHWFYEDNSVENNPSLKSLNLKEFTSLLFNSCDVLKPYVAHIDDIFKDFTSYKVRV 182
LVEYA+W+YEDN+VEN+P LKSL+LKEFTSLLFNSCDVL+PYV HIDDIFKDFTSYK RV
Sbjct: 49 LVEYAYWYYEDNAVENDPKLKSLSLKEFTSLLFNSCDVLRPYVTHIDDIFKDFTSYKCRV 108
Query: 183 PVTGAIILDETYERCLLVKGWKGTSWSFPRGKKSKDEEDHACAVREVLEETGFDVSKLLN 362
PVTGAIILDETYERCLLVKGWKG+SWSFPRGKKSKDEEDHACA+REVLEETGFDVSKLL
Sbjct: 109 PVTGAIILDETYERCLLVKGWKGSSWSFPRGKKSKDEEDHACAIREVLEETGFDVSKLLK 168
Query: 363 KDEYLEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWQRLDELQPAGDEVISRGST 542
++EY+E +F QQRVRLYI+AGV +DT FAPLTKKEISEI W RLD LQPA +EVI+ G +
Sbjct: 169 REEYIEFVFRQQRVRLYIVAGVTEDTVFAPLTKKEISEITWHRLDHLQPASNEVITHGVS 228
Query: 543 GLKLYMV 563
GLKLYMV
Sbjct: 229 GLKLYMV 235
>ref|NP_196861.1| unknown protein; protein id: At5g13570.1 [Arabidopsis thaliana]
gi|9758022|dbj|BAB08683.1| gene_id:MSH12.3~unknown
protein [Arabidopsis thaliana]
Length = 359
Score = 296 bits (757), Expect = 2e-79
Identities = 142/187 (75%), Positives = 159/187 (84%)
Frame = +3
Query: 3 LVEYAHWFYEDNSVENNPSLKSLNLKEFTSLLFNSCDVLKPYVAHIDDIFKDFTSYKVRV 182
LVEYA+W+YEDN+VEN+P L +CDVL+PYV HIDDIFKDFTSYK RV
Sbjct: 49 LVEYAYWYYEDNAVENDPKL--------------NCDVLRPYVTHIDDIFKDFTSYKCRV 94
Query: 183 PVTGAIILDETYERCLLVKGWKGTSWSFPRGKKSKDEEDHACAVREVLEETGFDVSKLLN 362
PVTGAIILDETYERCLLVKGWKG+SWSFPRGKKSKDEEDHACA+REVLEETGFDVSKLL
Sbjct: 95 PVTGAIILDETYERCLLVKGWKGSSWSFPRGKKSKDEEDHACAIREVLEETGFDVSKLLK 154
Query: 363 KDEYLEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWQRLDELQPAGDEVISRGST 542
++EY+E +F QQRVRLYI+AGV +DT FAPLTKKEISEI W RLD LQPA +EVI+ G +
Sbjct: 155 REEYIEFVFRQQRVRLYIVAGVTEDTVFAPLTKKEISEITWHRLDHLQPASNEVITHGVS 214
Query: 543 GLKLYMV 563
GLKLYMV
Sbjct: 215 GLKLYMV 221
>gb|AAK98701.1|AC069158_13 Putative ABC transporter [Oryza sativa]
Length = 1372
Score = 295 bits (754), Expect = 3e-79
Identities = 141/188 (75%), Positives = 161/188 (85%), Gaps = 1/188 (0%)
Frame = +3
Query: 3 LVEYAHWFYEDNSVENNPSLKSLNLKEFTSLLFNSCDVLKPYVAHIDDIFKDFTSYKVRV 182
L+E AHWFYEDNSVE+NPSLKSL+ K+FT+L+FNSC L+PY AH+DDI+KDFT YK RV
Sbjct: 134 LLEQAHWFYEDNSVEHNPSLKSLSFKDFTTLMFNSCAALRPYRAHLDDIYKDFTHYKFRV 193
Query: 183 PVTGAIILDETYERCLLVKGWKGT-SWSFPRGKKSKDEEDHACAVREVLEETGFDVSKLL 359
PV GAIILD+TYE+CLLVKGWK + SWSFPRGK+SKDEEDH CAVREVLEETG DVSKLL
Sbjct: 194 PVCGAIILDDTYEKCLLVKGWKSSASWSFPRGKRSKDEEDHTCAVREVLEETGCDVSKLL 253
Query: 360 NKDEYLEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWQRLDELQPAGDEVISRGS 539
++Y+EV QQRVRLYII GVK DT FAP TKKEISEI+W +DEL PAGD+ ISRG
Sbjct: 254 KLEDYIEVSMWQQRVRLYIITGVKGDTVFAPQTKKEISEISWHNIDELLPAGDDAISRGV 313
Query: 540 TGLKLYMV 563
G+KLYMV
Sbjct: 314 NGMKLYMV 321
>ref|NP_593780.1| hypothetical PSU1-like protein [Schizosaccharomyces pombe]
gi|7492013|pir||T37949 hypothetical PSU1-like protein -
fission yeast (Schizosaccharomyces pombe)
gi|2388911|emb|CAB11648.1| hypothetical PSU1-like
protein [Schizosaccharomyces pombe]
Length = 741
Score = 165 bits (418), Expect = 3e-40
Identities = 82/167 (49%), Positives = 109/167 (65%), Gaps = 1/167 (0%)
Frame = +3
Query: 6 VEYAHWFYEDNSVENNPSLKSLNLKEFTSLLFNSCDVLKPYVAHIDDIFKDFTSYKVRVP 185
+E AHWFYED N L SL L+ F++ LF C +L + ++ F DF YK R+P
Sbjct: 38 IEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLLWKWSKVHEEAFDDFLRYKTRIP 97
Query: 186 VTGAIILDETYERCLLVKGWKGTS-WSFPRGKKSKDEEDHACAVREVLEETGFDVSKLLN 362
V GAI+LD + ++C+LVKGWK +S W FP+GK KDE D CA+REV EETGFD S +N
Sbjct: 98 VRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRIN 157
Query: 363 KDEYLEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWQRLDEL 503
+E++++ Q VRLYII G+ DT F T+KEIS+I W L +L
Sbjct: 158 PNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDL 204
>dbj|BAB30946.1| unnamed protein product [Mus musculus]
Length = 422
Score = 159 bits (401), Expect = 3e-38
Identities = 80/189 (42%), Positives = 112/189 (58%), Gaps = 4/189 (2%)
Frame = +3
Query: 6 VEYAHWFYEDNSVENNPSLKSLNLKEFTSLLFNSCDVLKPYVAHIDDIFKDFTSYKVRVP 185
+E AHWFY D ++N P L +++F +F+ C L P ++ I ++ YK+ VP
Sbjct: 39 IELAHWFYLDFYMQNTPGLPQCGIRDFAKAVFSHCPFLLPQGEDVEKILDEWKEYKMGVP 98
Query: 186 VTGAIILDETYERCLLVKGWKGTS-WSFPRGKKSKDEEDHACAVREVLEETGFDVSKLLN 362
GAIILDET E LLV+G+ S W FP+GK +K+E H CA REV EETGFD+ +
Sbjct: 99 TYGAIILDETLENVLLVQGYLAKSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYIC 158
Query: 363 KDEYLEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWQRLDELQPAGDEVISRGST 542
KD+Y+E+ Q RLYII GV DT F P T++EI I W +++L +++ +
Sbjct: 159 KDDYIELRINDQLARLYIIPGVPKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKL 218
Query: 543 GL---KLYM 560
GL K YM
Sbjct: 219 GLAPNKFYM 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,364,397
Number of Sequences: 1393205
Number of extensions: 10010109
Number of successful extensions: 28679
Number of sequences better than 10.0: 256
Number of HSP's better than 10.0 without gapping: 27891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28642
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
