Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016757A_C01 KMC016757A_c01
(478 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA19796.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.0
emb|CAD53105.1| hypothetical protein, unlikely [Trypanosoma brucei] 32 3.5
ref|NP_796604.1| putative capsular polysaccharide biosynthesis p... 32 4.6
ref|NP_703816.1| hypothetical protein [Plasmodium falciparum 3D7... 32 4.6
gb|AAG32541.1| SalK [Streptococcus salivarius] 31 6.0
>gb|EAA19796.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1841
Score = 32.7 bits (73), Expect = 2.0
Identities = 25/101 (24%), Positives = 48/101 (46%), Gaps = 7/101 (6%)
Frame = +1
Query: 76 NYKDWS*YKSSKNYNASVLYFK-LQKRKITIRKS*YKLCYNNQYKS------KIEKKKEN 234
NY + + Y + NYN Y ++K++ RK+ Y L + YK+ ++ K
Sbjct: 1666 NYNNGNNYNNGNNYNNGNKYNNFVKKKEYDQRKNIYNLNDDISYKNIYPVNYFLKYKNNT 1725
Query: 235 G*LKK*NNTQMNTHQRTSIHFVFKLFFSLSHVVYSKFVKQL 357
+ K NT+ +T I+ ++ L + +Y+K+ +QL
Sbjct: 1726 ALINKHLNTKCEVCNKTGIYSCIHKYYDLKN-IYNKYYEQL 1765
>emb|CAD53105.1| hypothetical protein, unlikely [Trypanosoma brucei]
Length = 99
Score = 32.0 bits (71), Expect = 3.5
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 321 EREKQFKNKMN*GPLMCIHLCVVSF--F*LAIFFLLFYFTFVLIVIA*LVLGFSYCNFSL 148
+RE++ + K MC+ +CV SF F LA+ F +F F++ + L+L C F L
Sbjct: 7 KRERKKERKEGGEKKMCVSVCVFSFFVFSLALLFCYVHFLFMIPHLTILLLCCCCCFFPL 66
>ref|NP_796604.1| putative capsular polysaccharide biosynthesis protein CapF [Vibrio
parahaemolyticus RIMD 2210633]
gi|28805207|dbj|BAC58488.1| putative capsular
polysaccharide biosynthesis protein CapF [Vibrio
parahaemolyticus]
Length = 392
Score = 31.6 bits (70), Expect = 4.6
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = -2
Query: 264 LCVVSFF*LAIFFL--LFYFTFVLIVIA*LVLGFSYCNFSLL*FEI*NRSIVIFR-TLVL 94
LC + F LA+FFL ++FT ++ L + +Y SL F+ S ++F+ L+
Sbjct: 81 LCTIFLF-LALFFLGLYYFFTLTYCLVISLSISIAYNRISLSYFQARLDSRIVFKQELIR 139
Query: 93 GPIFVIFFLA 64
+ V+F LA
Sbjct: 140 SVLLVLFILA 149
>ref|NP_703816.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498477|emb|CAD50428.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2528
Score = 31.6 bits (70), Expect = 4.6
Identities = 22/67 (32%), Positives = 35/67 (51%), Gaps = 14/67 (20%)
Frame = -1
Query: 301 KQNELRSFDVYSF-VCCFIFLVS-------HFLSSFLFYFCIDCYSITCTRIF------L 164
KQN++ S DV+++ +C F+FL F FLFYF + + +C I+ L
Sbjct: 427 KQNKIYSNDVFNYNICLFLFLFKKEDIEEYFFFFFFLFYFLLLNNNKSCIVIYYDILLHL 486
Query: 163 L*FFSFV 143
+FSF+
Sbjct: 487 YDYFSFI 493
>gb|AAG32541.1| SalK [Streptococcus salivarius]
Length = 520
Score = 31.2 bits (69), Expect = 6.0
Identities = 20/75 (26%), Positives = 39/75 (51%), Gaps = 1/75 (1%)
Frame = -2
Query: 315 EKQFKNKMN*GPLMCIHLCVVSFF-*LAIFFLLFYFTFVLIVIA*LVLGFSYCNFSLL*F 139
+KQFK+K++ LM I + ++S +F LF F ++ + L++ Y +
Sbjct: 121 QKQFKDKLDKSLLMIIFVSIISLLVNRTLFNFLFLVVFTILHLYPLLVIVLYYRYFRQQI 180
Query: 138 EI*NRSIVIFRTLVL 94
+ RS+++F L+L
Sbjct: 181 SVVRRSLILFSLLLL 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 348,777,076
Number of Sequences: 1393205
Number of extensions: 6610607
Number of successful extensions: 15025
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14979
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
