KMC016735A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC016735A_C01 KMC016735A_c01
caaaaaaaagacaacgctcaagatcaaccgagttaattactactaccaagtgatgccctt
gggtctcaaaaacatatgaaCCACATATCAGAGGCTAATGGACAAGATCTTCCATAAGCA
AATATAGAAAAATGTTGAAGTATATGTGGAAGATATGATAGTAAAGTCCTCCCAAGAATA
GTTTCATAGAGGAGATCTCAGCCGAGACTTGAGTGATATCAACTGAATCTGGTCCAATGG
TCATCTCTGAGTGTACCTAGCCACTGTTTATTAGATTGCTTTACAGTATTAATTTAGTTT
GTGTTGTTACAGCTGTGTATGACATGTACCTCACATATTGTACAAATCAAGCTTTCTCCA
AGAAAAATGTGTAACTAATAACTTTTACTTGACAGTACTTATTGCAAAATGTAAATGTTC
TAAGCCATAAGAATATGTTATGGCTGCTATTTTAGGAGACGCATTTTAACTTGCTAAAGT
GGTAGCTTCACAACCATCATGCACACATGCCAAAACATCTTTGTAAGACCTTGAAATGGT
GAAAGAATCGTAGACATTTCCATCACTGCTTTTCTTGTACTCAAAGAGGAGAGATGAATG
ATTGAATGCAGTCAACTTGACAAACCCAAAGTCGTAATCTCTGACAAGGCTCCACTCTGG
GGTTTTTTCGCTGAATCTTGACAAATGGCTCCCTGCCCCTCCAGCAACAACATGAATTGT
TCCATTTACAATGCCAGAATAGTGAGACTTCTCTGTATTTACACATTTGTTCTGATAAAC
GGGGCATGTCCGTTCGTAGTTATGGACA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016735A_C01 KMC016735A_c01
(808 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB71132.1| hypothetical protein [Cicer arietinum] 192 4e-48
ref|NP_199851.1| putative protein; protein id: At5g50400.1 [Arab... 188 9e-47
ref|NP_194219.1| putative protein; protein id: At4g24890.1 [Arab... 186 3e-46
gb|AAN13063.1| unknown protein [Arabidopsis thaliana] 186 3e-46
emb|CAD12839.2| putative metallophosphatase [Lupinus luteus] 186 5e-46
>emb|CAB71132.1| hypothetical protein [Cicer arietinum]
Length = 216
Score = 192 bits (489), Expect = 4e-48
Identities = 88/113 (77%), Positives = 96/113 (84%)
Frame = -2
Query: 807 VHNYERTCPVYQNKCVNTEKSHYSGIVNGTIHVVAGGAGSHLSRFSEKTPEWSLVRDYDF 628
VHNYER CP+YQN+CVN EK+HYSG VNGTIH+V GG GSHLS F+ P WSL +D D+
Sbjct: 104 VHNYERVCPIYQNQCVNKEKTHYSGTVNGTIHIVVGGGGSHLSDFTTAPPVWSLYKDRDY 163
Query: 627 GFVKLTAFNHSSLLFEYKKSSDGNVYDSFTISRSYKDVLACVHDGCEATTLAS 469
GF KLTAFNHS LLFEYKKSSDG VYDSFTISR Y+DVLACVHDGCE TTLAS
Sbjct: 164 GFGKLTAFNHSYLLFEYKKSSDGKVYDSFTISRDYRDVLACVHDGCEKTTLAS 216
>ref|NP_199851.1| putative protein; protein id: At5g50400.1 [Arabidopsis thaliana]
gi|9758922|dbj|BAB09459.1| contains similarity to
unknown protein~gene_id:MXI22.12~pir||T05510
[Arabidopsis thaliana]
Length = 529
Score = 188 bits (477), Expect = 9e-47
Identities = 86/113 (76%), Positives = 97/113 (85%)
Frame = -2
Query: 807 VHNYERTCPVYQNKCVNTEKSHYSGIVNGTIHVVAGGAGSHLSRFSEKTPEWSLVRDYDF 628
VHNYERTCP+YQN+C++ EKSHYSG GTIHVV GGAGSHLS FS P+WS+ RDYD+
Sbjct: 417 VHNYERTCPIYQNQCMDNEKSHYSGAFKGTIHVVVGGAGSHLSSFSSLKPKWSIFRDYDY 476
Query: 627 GFVKLTAFNHSSLLFEYKKSSDGNVYDSFTISRSYKDVLACVHDGCEATTLAS 469
GFVKLTAF+HSSLLFEYKKSS+G V+DSFTI R Y+DVLACV D CE TTLAS
Sbjct: 477 GFVKLTAFDHSSLLFEYKKSSNGAVHDSFTIFREYRDVLACVRDSCEPTTLAS 529
>ref|NP_194219.1| putative protein; protein id: At4g24890.1 [Arabidopsis thaliana]
gi|7485455|pir||T05510 hypothetical protein F13M23.30 -
Arabidopsis thaliana gi|4455232|emb|CAB36731.1| putative
protein [Arabidopsis thaliana]
gi|7269339|emb|CAB79398.1| putative protein [Arabidopsis
thaliana]
Length = 545
Score = 186 bits (472), Expect = 3e-46
Identities = 85/112 (75%), Positives = 93/112 (82%)
Frame = -2
Query: 807 VHNYERTCPVYQNKCVNTEKSHYSGIVNGTIHVVAGGAGSHLSRFSEKTPEWSLVRDYDF 628
VHNYERTCP+Y+++CVN +K HYSG GTIHVV GGAGSHLS FS P+WSLVRDYDF
Sbjct: 433 VHNYERTCPIYESQCVNNDKDHYSGTFKGTIHVVVGGAGSHLSPFSSLVPKWSLVRDYDF 492
Query: 627 GFVKLTAFNHSSLLFEYKKSSDGNVYDSFTISRSYKDVLACVHDGCEATTLA 472
GFVKLTA +HSSLLFEYKKSS G VYDSF ISR Y+DVLAC HD CE TT A
Sbjct: 493 GFVKLTASDHSSLLFEYKKSSTGQVYDSFNISRDYRDVLACTHDSCEPTTSA 544
>gb|AAN13063.1| unknown protein [Arabidopsis thaliana]
Length = 615
Score = 186 bits (472), Expect = 3e-46
Identities = 85/112 (75%), Positives = 93/112 (82%)
Frame = -2
Query: 807 VHNYERTCPVYQNKCVNTEKSHYSGIVNGTIHVVAGGAGSHLSRFSEKTPEWSLVRDYDF 628
VHNYERTCP+Y+++CVN +K HYSG GTIHVV GGAGSHLS FS P+WSLVRDYDF
Sbjct: 503 VHNYERTCPIYESQCVNNDKDHYSGTFKGTIHVVVGGAGSHLSPFSSLVPKWSLVRDYDF 562
Query: 627 GFVKLTAFNHSSLLFEYKKSSDGNVYDSFTISRSYKDVLACVHDGCEATTLA 472
GFVKLTA +HSSLLFEYKKSS G VYDSF ISR Y+DVLAC HD CE TT A
Sbjct: 563 GFVKLTASDHSSLLFEYKKSSTGQVYDSFNISRDYRDVLACTHDSCEPTTSA 614
>emb|CAD12839.2| putative metallophosphatase [Lupinus luteus]
Length = 597
Score = 186 bits (471), Expect = 5e-46
Identities = 85/113 (75%), Positives = 96/113 (84%)
Frame = -2
Query: 807 VHNYERTCPVYQNKCVNTEKSHYSGIVNGTIHVVAGGAGSHLSRFSEKTPEWSLVRDYDF 628
VHNYER CP+YQN+CVN+EK+HYSG VNGTIHVV GG GSHLS ++ P WS+ RD DF
Sbjct: 485 VHNYERICPIYQNQCVNSEKTHYSGTVNGTIHVVVGGGGSHLSDYTPSPPVWSVFRDRDF 544
Query: 627 GFVKLTAFNHSSLLFEYKKSSDGNVYDSFTISRSYKDVLACVHDGCEATTLAS 469
GF KLTAFNHS LLFEYK+SSDGNVYD FTISR Y+DVLA VHDGC+ TTLA+
Sbjct: 545 GFGKLTAFNHSYLLFEYKRSSDGNVYDFFTISRDYRDVLARVHDGCDKTTLAT 597
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 666,744,789
Number of Sequences: 1393205
Number of extensions: 14056430
Number of successful extensions: 50214
Number of sequences better than 10.0: 467
Number of HSP's better than 10.0 without gapping: 49063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50177
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41176381974
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
SPDL020d12_f |
BP053246 |
1 |
492 |
2 |
MFBL044f10_f |
BP043511 |
356 |
808 |
|
Lotus japonicus
Kazusa DNA Research Institute