Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016720A_C01 KMC016720A_c01
(974 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL18930.1|AF429389_1 hydroxymethylglutaryl coenzyme A syntha... 326 3e-88
gb|AAK73854.1| hydroxymethylglutaryl coenzyme A synthase [Hevea ... 321 9e-87
gb|AAO15287.1| Putative hydroxymethylglutaryl coenzyme A synthas... 310 3e-83
gb|AAF69804.1|AF148847_1 HMG-CoA synthase [Brassica juncea] 308 1e-82
gb|AAG32922.1|AF188639_1 HMG-CoA synthase [Brassica juncea] 305 5e-82
>gb|AAL18930.1|AF429389_1 hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
Length = 464
Score = 326 bits (836), Expect = 3e-88
Identities = 158/220 (71%), Positives = 186/220 (83%)
Frame = -2
Query: 874 KMEGRPFSISDSDYFVFHSPYNKLVQKSXGRLYFNDFQRNPSFVDEVSRNALAPFASLSG 695
K EG+ FSISD++YFVFHSPYNKLVQKS RL FNDF RN S +DE ++ LAPF++LSG
Sbjct: 230 KFEGKQFSISDAEYFVFHSPYNKLVQKSFARLVFNDFVRNASSIDETAKEKLAPFSNLSG 289
Query: 694 DESYRSRDLEKANQQAAKHVYDAKVQPGTLIPKQVGNMYTASLYSAFASLLHNKHDSLVG 515
DESY++RDLEK +QQ AK +YDAKV+P TLIPKQVGNMYTASLY+AFASLLH+KH L G
Sbjct: 290 DESYQNRDLEKVSQQVAKPLYDAKVKPTTLIPKQVGNMYTASLYAAFASLLHSKHTELAG 349
Query: 514 KRVVMFSYGSGLTATMFSFRLQEGQQPFNLSNIVKLMNVSDKLKQRIEVTPEKFVETLKI 335
KRV +FSYGSGLTATMFS RL EGQ PF+LSNI +MNV+ KLK R E+ PEKFV+ +K+
Sbjct: 350 KRVTLFSYGSGLTATMFSLRLHEGQHPFSLSNIASVMNVAGKLKARHELPPEKFVDIMKL 409
Query: 334 MEQRYGAKDFVTSMDCSYLHPGTFYLTKVDSMYRRFYSKK 215
ME RYGAKDFVTS DCS L GT+YLT+VDS+YRRFY++K
Sbjct: 410 MEHRYGAKDFVTSKDCSLLASGTYYLTEVDSLYRRFYAQK 449
>gb|AAK73854.1| hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
Length = 464
Score = 321 bits (823), Expect = 9e-87
Identities = 156/220 (70%), Positives = 183/220 (82%)
Frame = -2
Query: 874 KMEGRPFSISDSDYFVFHSPYNKLVQKSXGRLYFNDFQRNPSFVDEVSRNALAPFASLSG 695
K EG+ FSISD++YFVFHSPYNKLVQKS RL FNDF RN +DE ++ LAPF++LSG
Sbjct: 230 KFEGKQFSISDAEYFVFHSPYNKLVQKSFARLVFNDFVRNARSIDETAKEKLAPFSNLSG 289
Query: 694 DESYRSRDLEKANQQAAKHVYDAKVQPGTLIPKQVGNMYTASLYSAFASLLHNKHDSLVG 515
DESY++RDLEK +QQ AK +YDAKV+P TLIPKQVGNMYTASLY+AFASLLH+KH L G
Sbjct: 290 DESYQNRDLEKVSQQVAKPLYDAKVKPTTLIPKQVGNMYTASLYAAFASLLHSKHTELAG 349
Query: 514 KRVVMFSYGSGLTATMFSFRLQEGQQPFNLSNIVKLMNVSDKLKQRIEVTPEKFVETLKI 335
KRV +FSYGSGLTATMFS RL EGQ PF+LSNI +MNV+ KLK R E+ PEKFV +K+
Sbjct: 350 KRVTLFSYGSGLTATMFSLRLHEGQHPFSLSNIASVMNVAGKLKARHELPPEKFVNIMKL 409
Query: 334 MEQRYGAKDFVTSMDCSYLHPGTFYLTKVDSMYRRFYSKK 215
ME RYGAKDFV S DCS L GT+YLT+VDS+YRRFY++K
Sbjct: 410 MEHRYGAKDFVRSKDCSLLASGTYYLTEVDSLYRRFYAQK 449
>gb|AAO15287.1| Putative hydroxymethylglutaryl coenzyme A synthase [Oryza sativa
(japonica cultivar-group)]
Length = 463
Score = 310 bits (793), Expect = 3e-83
Identities = 157/243 (64%), Positives = 191/243 (77%), Gaps = 2/243 (0%)
Frame = -2
Query: 937 KLSQTLS-HGTDSAIGFYVRN*-KMEGRPFSISDSDYFVFHSPYNKLVQKSXGRLYFNDF 764
KLSQT DS + + K+EG+ FSI D+DYFVFHSPYNKLVQKS RLY+NDF
Sbjct: 210 KLSQTCYLMALDSCYNVFCKKYEKLEGKQFSIHDADYFVFHSPYNKLVQKSFARLYYNDF 269
Query: 763 QRNPSFVDEVSRNALAPFASLSGDESYRSRDLEKANQQAAKHVYDAKVQPGTLIPKQVGN 584
R S V++ SR L P++ LS +ESY+SR+LEKA+QQ AKH+YD+KVQP TLIPKQVGN
Sbjct: 270 LRKCSTVEDGSREKLEPYSGLSSEESYQSRELEKASQQVAKHLYDSKVQPITLIPKQVGN 329
Query: 583 MYTASLYSAFASLLHNKHDSLVGKRVVMFSYGSGLTATMFSFRLQEGQQPFNLSNIVKLM 404
MYTASLY+A AS++HNK+++L G+R+VMFSYGSGLT+TMFSF++ EGQ PF LSNI ++
Sbjct: 330 MYTASLYAALASVMHNKNETLAGQRIVMFSYGSGLTSTMFSFKINEGQHPFILSNIAGIL 389
Query: 403 NVSDKLKQRIEVTPEKFVETLKIMEQRYGAKDFVTSMDCSYLHPGTFYLTKVDSMYRRFY 224
+VS KL+ R V PEKFV LK+ME RYGAKDF TS D S L PGT+YLT VDSMYRRFY
Sbjct: 390 DVSKKLESRHVVAPEKFVAALKLMEHRYGAKDFTTSQDTSLLAPGTYYLTHVDSMYRRFY 449
Query: 223 SKK 215
+ K
Sbjct: 450 AVK 452
>gb|AAF69804.1|AF148847_1 HMG-CoA synthase [Brassica juncea]
Length = 461
Score = 308 bits (788), Expect = 1e-82
Identities = 153/222 (68%), Positives = 178/222 (79%), Gaps = 2/222 (0%)
Frame = -2
Query: 874 KMEGRPFSISDSDYFVFHSPYNKLVQKSXGRLYFNDFQRNPSFVDEVSRNALAPFASLSG 695
K+EG+ FSI+D+DYFVFHSPYNKLVQKS RL +NDF RN S +DE ++ P++SLS
Sbjct: 230 KLEGKEFSINDADYFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSL 289
Query: 694 DESYRSRDLEKANQQAAKHVYDAKVQPGTLIPKQVGNMYTASLYSAFASLLHNKHDSLVG 515
DESY+SRDLEK +QQ AK YDAKVQP TL+PKQVGNMYTASLY+AFASL+HNKH L G
Sbjct: 290 DESYQSRDLEKVSQQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDLAG 349
Query: 514 KRVVMFSYGSGLTATMFSFRLQEGQQPFNLSNIVKLMNVSDKLKQRIEVTPEKFVETLKI 335
KRVVMFSYGSG TATMFS RL E Q PF+LSNI +M+V KLK R E PEKFVET+K+
Sbjct: 350 KRVVMFSYGSGSTATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAPEKFVETMKL 409
Query: 334 MEQRYGAKDFVTSMD--CSYLHPGTFYLTKVDSMYRRFYSKK 215
ME RYGAK+FVTS + L PGT+YL +VDS+YRRFY KK
Sbjct: 410 MEHRYGAKEFVTSKEGILDLLAPGTYYLKEVDSLYRRFYGKK 451
>gb|AAG32922.1|AF188639_1 HMG-CoA synthase [Brassica juncea]
Length = 461
Score = 305 bits (782), Expect = 5e-82
Identities = 150/222 (67%), Positives = 178/222 (79%), Gaps = 2/222 (0%)
Frame = -2
Query: 874 KMEGRPFSISDSDYFVFHSPYNKLVQKSXGRLYFNDFQRNPSFVDEVSRNALAPFASLSG 695
K+EG+ FSI+D+DYFVFHSPYNKLVQKS RL +NDF RN S +DE ++ P++SLS
Sbjct: 230 KLEGKEFSINDADYFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSL 289
Query: 694 DESYRSRDLEKANQQAAKHVYDAKVQPGTLIPKQVGNMYTASLYSAFASLLHNKHDSLVG 515
DESY+SRDLEK +QQ AK YDAKVQP TL+PK+VGNMYTASLY+AFASL+HN+H L G
Sbjct: 290 DESYQSRDLEKVSQQVAKTFYDAKVQPTTLVPKEVGNMYTASLYAAFASLIHNEHSDLAG 349
Query: 514 KRVVMFSYGSGLTATMFSFRLQEGQQPFNLSNIVKLMNVSDKLKQRIEVTPEKFVETLKI 335
KRVVMFSYGSG TATMFS RL E Q PF+LSNI +M++ KLK R E PEKFVET+K+
Sbjct: 350 KRVVMFSYGSGSTATMFSLRLCENQSPFSLSNIASVMDIGGKLKARHEYAPEKFVETMKL 409
Query: 334 MEQRYGAKDFVTSMD--CSYLHPGTFYLTKVDSMYRRFYSKK 215
ME RYGAK+FVTS + L PGT+YL +VDS+YRRFY KK
Sbjct: 410 MEHRYGAKEFVTSKEGILELLAPGTYYLKEVDSLYRRFYGKK 451
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 789,856,334
Number of Sequences: 1393205
Number of extensions: 16662029
Number of successful extensions: 40329
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 38596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40201
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 55742331432
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
