Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016713A_C01 KMC016713A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_349994.1| Uncharactecterized conserved membrane protein, ... 37 0.090
ref|NP_462191.1| putative cytoplasmic protein [Salmonella typhim... 32 3.8
sp|P42290|DBDR_XENLA D(1B) DOPAMINE RECEPTOR (D(5) DOPAMINE RECE... 32 3.8
ref|NP_611687.1| CG4329-PA [Drosophila melanogaster] gi|7291438|... 31 8.4
gb|AAN71097.1| AT22944p [Drosophila melanogaster] 31 8.4
>ref|NP_349994.1| Uncharactecterized conserved membrane protein, possible ABC-type
MDR permease [Clostridium acetobutylicum]
gi|25497686|pir||C97318 uncharactecterized conserved
membrane protein, probable ABC-type MDR permease CAC3404
[imported] - Clostridium acetobutylicum
gi|15026490|gb|AAK81334.1|AE007837_12 Uncharactecterized
conserved membrane protein, possible ABC-type MDR
permease [Clostridium acetobutylicum]
Length = 247
Score = 37.4 bits (85), Expect = 0.090
Identities = 20/58 (34%), Positives = 31/58 (52%)
Frame = -3
Query: 219 IESGSPLSPLPF*TETLFDYFIWLPWYQESQRIFLSTIGICSSGSVLSLALCKLFIKP 46
+ES S LSPL + TE +F Y I+L TIG+ S++ + +C++ KP
Sbjct: 191 VESISNLSPLKWITECIFRII-----YDNDFSIYLPTIGVMLVSSIICIVICQIIFKP 243
>ref|NP_462191.1| putative cytoplasmic protein [Salmonella typhimurium LT2]
gi|16421837|gb|AAL22150.1| putative cytoplasmic protein
[Salmonella typhimurium LT2]
Length = 176
Score = 32.0 bits (71), Expect = 3.8
Identities = 13/32 (40%), Positives = 19/32 (58%), Gaps = 6/32 (18%)
Frame = -3
Query: 165 DYFIWLPWYQESQRIF------LSTIGICSSG 88
DY WLPW+ E QR++ L+ + C+SG
Sbjct: 31 DYDDWLPWFTEEQRLYGDPAKMLNNLATCNSG 62
>sp|P42290|DBDR_XENLA D(1B) DOPAMINE RECEPTOR (D(5) DOPAMINE RECEPTOR)
gi|2119498|pir||I51660 dopamine D1B receptor - African
clawed frog (fragment) gi|559762|gb|AAA50829.1| dopamine
D1B receptor
Length = 457
Score = 32.0 bits (71), Expect = 3.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 264 FLSDFTIPFKIELFDIESGSPLSPLPF*TETLFDYFIWLPWYQES 130
F+ + +PF D G P + LP +ET FD F+W W S
Sbjct: 299 FILNCMVPF----CDRSPGHPQAGLPCVSETTFDIFVWFGWANSS 339
>ref|NP_611687.1| CG4329-PA [Drosophila melanogaster] gi|7291438|gb|AAF46864.1|
CG4329-PA [Drosophila melanogaster]
Length = 1171
Score = 30.8 bits (68), Expect = 8.4
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -2
Query: 220 HRKWFAIITSPILNGNFI*LFHLAALVSRESKNFSEYHRNL*FRLCIVTS 71
HRK A++ NG +I ++ LA L R HRN + I T+
Sbjct: 82 HRKLLAVVERHSKNGRYISIYELATLKKRRHLELPSNHRNAEIQQMIFTN 131
>gb|AAN71097.1| AT22944p [Drosophila melanogaster]
Length = 1171
Score = 30.8 bits (68), Expect = 8.4
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -2
Query: 220 HRKWFAIITSPILNGNFI*LFHLAALVSRESKNFSEYHRNL*FRLCIVTS 71
HRK A++ NG +I ++ LA L R HRN + I T+
Sbjct: 82 HRKLLAVVERHSKNGRYISIYELATLKKRRHLELPSNHRNAEIQQMIFTN 131
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,268,345
Number of Sequences: 1393205
Number of extensions: 8049993
Number of successful extensions: 15348
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15345
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
