Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016711A_C01 KMC016711A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176297.1| putative cleavage and polyadenylation specifici... 125 5e-28
gb|AAL66977.1| putative cleavage and polyadenylation specificity... 122 2e-27
gb|AAO20067.1| putative cleavage and polyadenylation specifity f... 98 6e-20
gb|AAO51862.1| similar to Homo sapiens (Human). Cleavage and pol... 40 0.015
dbj|BAA08788.1| SBE2 [Saccharomyces cerevisiae] 33 3.2
>ref|NP_176297.1| putative cleavage and polyadenylation specificity factor; protein
id: At1g61010.1, supported by cDNA: gi_18377653
[Arabidopsis thaliana] gi|25353318|pir||G96635
hypothetical protein T7P1.15 [imported] - Arabidopsis
thaliana gi|12323330|gb|AAG51638.1|AC018908_4 putative
cleavage and polyadenylation specificity factor;
72745-70039 [Arabidopsis thaliana]
gi|23297661|gb|AAN13003.1| putative cleavage and
polyadenylation specificity factor [Arabidopsis
thaliana] gi|24415578|gb|AAN41458.1| putative cleavage
and polyadenylation specificity factor 73 kDa subunit
[Arabidopsis thaliana]
Length = 693
Score = 125 bits (313), Expect = 5e-28
Identities = 62/79 (78%), Positives = 72/79 (90%)
Frame = -1
Query: 560 EEENEKKXEKVMHALLVSLFGDVKVGENGQLIINIDGNVAELNKESGEVESENEGLKERV 381
EEEN KK EKV++ALLVSLFGDVK+GENG+L+I +DGNVA+L+KESGEVESE+ GLKERV
Sbjct: 615 EEENGKKVEKVIYALLVSLFGDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKERV 674
Query: 380 NTAFRRIQSSVKPIPLSAS 324
AF RIQS+VKPIPLSAS
Sbjct: 675 RVAFERIQSAVKPIPLSAS 693
>gb|AAL66977.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
Length = 693
Score = 122 bits (307), Expect = 2e-27
Identities = 61/79 (77%), Positives = 71/79 (89%)
Frame = -1
Query: 560 EEENEKKXEKVMHALLVSLFGDVKVGENGQLIINIDGNVAELNKESGEVESENEGLKERV 381
EEEN KK EKV++ALLVSLFGDVK+GENG+L+I +D NVA+L+KESGEVESE+ GLKERV
Sbjct: 615 EEENGKKVEKVIYALLVSLFGDVKLGENGKLVIRVDSNVAQLDKESGEVESEHSGLKERV 674
Query: 380 NTAFRRIQSSVKPIPLSAS 324
AF RIQS+VKPIPLSAS
Sbjct: 675 RVAFERIQSAVKPIPLSAS 693
>gb|AAO20067.1| putative cleavage and polyadenylation specifity factor protein
[Oryza sativa (japonica cultivar-group)]
gi|29126360|gb|AAO66552.1| putative cleavage and
polyadenylation specifity factor [Oryza sativa (japonica
cultivar-group)]
Length = 700
Score = 98.2 bits (243), Expect = 6e-20
Identities = 47/79 (59%), Positives = 63/79 (79%)
Frame = -1
Query: 560 EEENEKKXEKVMHALLVSLFGDVKVGENGQLIINIDGNVAELNKESGEVESENEGLKERV 381
+EE E+ +KV++AL+VSLFGDVKV E G+L+I++DG VA L+ SG VE EN L+ER+
Sbjct: 622 QEETERVAQKVVYALMVSLFGDVKVAEEGKLVISVDGQVAHLDGRSGGVECENATLRERI 681
Query: 380 NTAFRRIQSSVKPIPLSAS 324
TAFRRIQ +V+PIPL +S
Sbjct: 682 KTAFRRIQGAVRPIPLISS 700
>gb|AAO51862.1| similar to Homo sapiens (Human). Cleavage and polyadenylation
specificity factor, 73 kDa subunit (CPSF 73 kDa subunit)
[Dictyostelium discoideum]
Length = 774
Score = 40.4 bits (93), Expect = 0.015
Identities = 24/62 (38%), Positives = 38/62 (60%), Gaps = 2/62 (3%)
Frame = -1
Query: 518 LLVSLFGDVKVGENGQLII--NIDGNVAELNKESGEVESENEGLKERVNTAFRRIQSSVK 345
LL +G+ KV EN LI+ N+D A ++ E+ VES ++ LK+++ + +RI SV
Sbjct: 690 LLEQQYGNFKVDENDPLILHFNLDNQKAIIHLETLTVESLDQILKQKIENSIKRIILSVS 749
Query: 344 PI 339
PI
Sbjct: 750 PI 751
>dbj|BAA08788.1| SBE2 [Saccharomyces cerevisiae]
Length = 824
Score = 32.7 bits (73), Expect = 3.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 237 REAWEIVFLITSTCIPPFCKTAYDER 314
+E WE+V LI TC CK YD R
Sbjct: 651 KETWEMVNLIQMTCFSEICKEKYDSR 676
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,612,685
Number of Sequences: 1393205
Number of extensions: 9015037
Number of successful extensions: 23542
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 22924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23540
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
