Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016688A_C01 KMC016688A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08415.1| spermidine synthase [Arabidopsis thaliana] 139 2e-32
gb|AAM64782.1| spermidine synthase [Arabidopsis thaliana] 139 2e-32
ref|NP_568785.1| spermidine synthase; protein id: At5g53120.1, s... 139 2e-32
gb|AAL11565.1|AF424571_1 AT5g53120/MFH8_5 [Arabidopsis thaliana] 139 2e-32
emb|CAB61759.1| putative aminopropyltransferase [Oryza sativa (j... 132 3e-30
>dbj|BAB08415.1| spermidine synthase [Arabidopsis thaliana]
Length = 343
Score = 139 bits (351), Expect = 2e-32
Identities = 64/82 (78%), Positives = 75/82 (91%)
Frame = -3
Query: 535 VCRETFKGSVHYAWASVPTYPSGLIGFLLCSTEGPPVDFVNPINPIEKLEGADKHKRKLR 356
+CR+TFK SVHYAW+SVPTYPSG+IGF+LCSTEGP VDF NPINPIEKL+GA HKR+L+
Sbjct: 258 ICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTHKRELK 316
Query: 355 FYNSEMHTAAFALPAFLKREVS 290
FYNS+MH AAFALP FL+REV+
Sbjct: 317 FYNSDMHRAAFALPTFLRREVA 338
>gb|AAM64782.1| spermidine synthase [Arabidopsis thaliana]
Length = 345
Score = 139 bits (351), Expect = 2e-32
Identities = 64/82 (78%), Positives = 75/82 (91%)
Frame = -3
Query: 535 VCRETFKGSVHYAWASVPTYPSGLIGFLLCSTEGPPVDFVNPINPIEKLEGADKHKRKLR 356
+CR+TFK SVHYAW+SVPTYPSG+IGF+LCSTEGP VDF NPINPIEKL+GA HKR+L+
Sbjct: 260 ICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTHKRELK 318
Query: 355 FYNSEMHTAAFALPAFLKREVS 290
FYNS+MH AAFALP FL+REV+
Sbjct: 319 FYNSDMHRAAFALPTFLRREVA 340
>ref|NP_568785.1| spermidine synthase; protein id: At5g53120.1, supported by cDNA:
33021., supported by cDNA: gi_14532777, supported by
cDNA: gi_15983393, supported by cDNA: gi_19310734
[Arabidopsis thaliana] gi|14532778|gb|AAK64170.1|
putative spermidine synthase [Arabidopsis thaliana]
gi|19310735|gb|AAL85098.1| putative spermidine synthase
[Arabidopsis thaliana] gi|23397201|gb|AAN31883.1|
putative spermidine synthase [Arabidopsis thaliana]
Length = 359
Score = 139 bits (351), Expect = 2e-32
Identities = 64/82 (78%), Positives = 75/82 (91%)
Frame = -3
Query: 535 VCRETFKGSVHYAWASVPTYPSGLIGFLLCSTEGPPVDFVNPINPIEKLEGADKHKRKLR 356
+CR+TFK SVHYAW+SVPTYPSG+IGF+LCSTEGP VDF NPINPIEKL+GA HKR+L+
Sbjct: 274 ICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTHKRELK 332
Query: 355 FYNSEMHTAAFALPAFLKREVS 290
FYNS+MH AAFALP FL+REV+
Sbjct: 333 FYNSDMHRAAFALPTFLRREVA 354
>gb|AAL11565.1|AF424571_1 AT5g53120/MFH8_5 [Arabidopsis thaliana]
Length = 359
Score = 139 bits (351), Expect = 2e-32
Identities = 64/82 (78%), Positives = 75/82 (91%)
Frame = -3
Query: 535 VCRETFKGSVHYAWASVPTYPSGLIGFLLCSTEGPPVDFVNPINPIEKLEGADKHKRKLR 356
+CR+TFK SVHYAW+SVPTYPSG+IGF+LCSTEGP VDF NPINPIEKL+GA HKR+L+
Sbjct: 274 ICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTHKRELK 332
Query: 355 FYNSEMHTAAFALPAFLKREVS 290
FYNS+MH AAFALP FL+REV+
Sbjct: 333 FYNSDMHRAAFALPTFLRREVA 354
>emb|CAB61759.1| putative aminopropyltransferase [Oryza sativa (japonica
cultivar-group)]
Length = 197
Score = 132 bits (331), Expect = 3e-30
Identities = 57/81 (70%), Positives = 72/81 (88%)
Frame = -3
Query: 535 VCRETFKGSVHYAWASVPTYPSGLIGFLLCSTEGPPVDFVNPINPIEKLEGADKHKRKLR 356
+CRETFKG+VHYAW SVPTYPSG+IGFLLC+ EGP V+F++P+NPIEKLEGA + R++R
Sbjct: 82 ICRETFKGAVHYAWTSVPTYPSGVIGFLLCAKEGPAVNFLSPVNPIEKLEGAMEAGREIR 141
Query: 355 FYNSEMHTAAFALPAFLKREV 293
FYNSE+H AAF LP F++RE+
Sbjct: 142 FYNSEVHRAAFVLPTFVRREL 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,453,881
Number of Sequences: 1393205
Number of extensions: 10062742
Number of successful extensions: 20188
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 19525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20115
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
