KMC016681A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC016681A_C01 KMC016681A_c01
ttagttaataaatatgttccgggcaaagttcacaaatccatcatggcacaagaatagaca
atcatATTTGTTTTTTCATTGTTGAGAAGGGGCTTGCACGATTAGTATCCGGATAGAACC
AATCAAAGGAAATAAAGTTTTTTTGGGAAAATACTGGAATAGGAGAAAGAATTCTCAAAT
CCTTTGCCCTCAGTTCTCATATATAGGTGTTCCTAAACGCATCATTTTTATCTTGCTCCT
TCTATTTCTAAACCTCAGTTCGTAGCATCCCCTAGATAGAATCTAACTAACTAATTAATG
GTGGGCTGAGTACGTAGTGATCCTTATAACTGCCGACCGATTCTGATTTCTGATCTGTGG
TGTGGCAAAAGACTAAGAGAATGGTTGTGTGCTCCTTGTATTCCATAGGCTTGAGCTTGG
CCTTCAAAAATAAGTTCAGTTGGCACTTGACAAATTTTTAAATCGCCCTAGCAACATTAT
GAAAGACCATTCTCACAAAAATACAAATCACAACACACAAAAT


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC016681A_C01 KMC016681A_c01
         (523 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_048090.1| ORF MSV019 hypothetical protein [Melanoplus san...    31  7.6

>ref|NP_048090.1| ORF MSV019 hypothetical protein [Melanoplus sanguinipes
           entomopoxvirus] gi|11361218|pir||T28180 hypothetical
           protein ORF19 - Melanoplus sanguinipes entomopoxvirus
           (strain Tuscon) gi|4049891|gb|AAC97851.1| ORF MSV019
           hypothetical protein [Melanoplus sanguinipes
           entomopoxvirus]
          Length = 437

 Score = 31.2 bits (69), Expect = 7.6
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +2

Query: 89  GACTISIRIEPIKGNKVFLGKYWNRRKNSQILCPQFSYIGVPKRI 223
           G   ISI IEP K NK+ L    N+ K +  +   F YI   K I
Sbjct: 78  GDLDISINIEPNKFNKIILDNIKNKNKKTYKITDIFEYINDEKLI 122

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,232,195
Number of Sequences: 1393205
Number of extensions: 8267342
Number of successful extensions: 16040
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16031
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPDL065f06_f BP056054 1 482
2 SPDL016d07_f BP052991 174 538




Lotus japonicus
Kazusa DNA Research Institute