KMC016681A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC016681A_C01 KMC016681A_c01
ttagttaataaatatgttccgggcaaagttcacaaatccatcatggcacaagaatagaca
atcatATTTGTTTTTTCATTGTTGAGAAGGGGCTTGCACGATTAGTATCCGGATAGAACC
AATCAAAGGAAATAAAGTTTTTTTGGGAAAATACTGGAATAGGAGAAAGAATTCTCAAAT
CCTTTGCCCTCAGTTCTCATATATAGGTGTTCCTAAACGCATCATTTTTATCTTGCTCCT
TCTATTTCTAAACCTCAGTTCGTAGCATCCCCTAGATAGAATCTAACTAACTAATTAATG
GTGGGCTGAGTACGTAGTGATCCTTATAACTGCCGACCGATTCTGATTTCTGATCTGTGG
TGTGGCAAAAGACTAAGAGAATGGTTGTGTGCTCCTTGTATTCCATAGGCTTGAGCTTGG
CCTTCAAAAATAAGTTCAGTTGGCACTTGACAAATTTTTAAATCGCCCTAGCAACATTAT
GAAAGACCATTCTCACAAAAATACAAATCACAACACACAAAAT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016681A_C01 KMC016681A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_048090.1| ORF MSV019 hypothetical protein [Melanoplus san... 31 7.6
>ref|NP_048090.1| ORF MSV019 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus] gi|11361218|pir||T28180 hypothetical
protein ORF19 - Melanoplus sanguinipes entomopoxvirus
(strain Tuscon) gi|4049891|gb|AAC97851.1| ORF MSV019
hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 437
Score = 31.2 bits (69), Expect = 7.6
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 89 GACTISIRIEPIKGNKVFLGKYWNRRKNSQILCPQFSYIGVPKRI 223
G ISI IEP K NK+ L N+ K + + F YI K I
Sbjct: 78 GDLDISINIEPNKFNKIILDNIKNKNKKTYKITDIFEYINDEKLI 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,232,195
Number of Sequences: 1393205
Number of extensions: 8267342
Number of successful extensions: 16040
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16031
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
SPDL065f06_f |
BP056054 |
1 |
482 |
2 |
SPDL016d07_f |
BP052991 |
174 |
538 |
|
Lotus japonicus
Kazusa DNA Research Institute