Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016663A_C01 KMC016663A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06594 heat shock protein dnaJ - garden pea gi|1707657|emb|... 110 9e-24
gb|AAK60328.1|AF385738_1 At1g80030/F18B13_37 [Arabidopsis thalia... 79 2e-14
ref|NP_565227.1| DnaJ protein, putative; protein id: At1g80030.1... 79 2e-14
pir||G96831 hypothetical protein F18B13.12 [imported] - Arabidop... 52 3e-06
gb|AAF73774.1|AF154007_1 surface protein PspC [Streptococcus pne... 36 0.28
>pir||T06594 heat shock protein dnaJ - garden pea gi|1707657|emb|CAA96305.1|
DnaJ homologue [Pisum sativum]
Length = 498
Score = 110 bits (275), Expect = 9e-24
Identities = 57/89 (64%), Positives = 71/89 (79%), Gaps = 4/89 (4%)
Frame = -1
Query: 505 RISTQERELLEELGSIVDKTSSRSKSRPRTQSSTGSSESPVAQKPESPSPTVAE----NS 338
RIS++ERE+LEEL S+ TSS S+SRPRTQ STGS E+P AQ+ ESP+ TV E +
Sbjct: 411 RISSKEREVLEELASL-GGTSSHSRSRPRTQPSTGSKEAPAAQRAESPTETVTEKPEKSE 469
Query: 337 EEQNDIWNQLKDLAGSVANGALKWLKDNL 251
EE +D+WN+LK++AGSVANGALKW KDNL
Sbjct: 470 EEDDDLWNKLKNMAGSVANGALKWFKDNL 498
>gb|AAK60328.1|AF385738_1 At1g80030/F18B13_37 [Arabidopsis thaliana]
gi|23505965|gb|AAN28842.1| At1g80030/F18B13_37
[Arabidopsis thaliana]
Length = 500
Score = 79.3 bits (194), Expect = 2e-14
Identities = 43/88 (48%), Positives = 59/88 (66%), Gaps = 3/88 (3%)
Frame = -1
Query: 505 RISTQERELLEELGSIVDKTSSRSKSRPRTQSSTGSSESPVAQKPESPSPTVAENSEE-- 332
+IS ERELLEEL S+ D +S+RS++R + Q + S +P E+ V E +EE
Sbjct: 415 QISAGERELLEELASLKDTSSNRSRTRAKPQQPSTLSTAPSGS--ENKKDEVKEENEEPE 472
Query: 331 -QNDIWNQLKDLAGSVANGALKWLKDNL 251
+N +WN +K+ AGSVANGALKWL+DNL
Sbjct: 473 QENYLWNNIKEFAGSVANGALKWLRDNL 500
>ref|NP_565227.1| DnaJ protein, putative; protein id: At1g80030.1, supported by cDNA:
gi_14326567 [Arabidopsis thaliana]
Length = 500
Score = 79.3 bits (194), Expect = 2e-14
Identities = 43/88 (48%), Positives = 59/88 (66%), Gaps = 3/88 (3%)
Frame = -1
Query: 505 RISTQERELLEELGSIVDKTSSRSKSRPRTQSSTGSSESPVAQKPESPSPTVAENSEE-- 332
+IS ERELLEEL S+ D +S+RS++R + Q + S +P E+ V E +EE
Sbjct: 415 QISAGERELLEELASLKDTSSNRSRTRAKPQQPSTLSTAPSGS--ENKKDEVKEENEEPE 472
Query: 331 -QNDIWNQLKDLAGSVANGALKWLKDNL 251
+N +WN +K+ AGSVANGALKWL+DNL
Sbjct: 473 QENYLWNNIKEFAGSVANGALKWLRDNL 500
>pir||G96831 hypothetical protein F18B13.12 [imported] - Arabidopsis thaliana
gi|5902381|gb|AAD55483.1|AC009322_23 Similar to DNAJ
proteins [Arabidopsis thaliana]
Length = 499
Score = 52.4 bits (124), Expect = 3e-06
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Frame = -1
Query: 505 RISTQERELLEELGSIVDKTSSRSKSRPRTQSSTGSSESPVAQKPESPSPTVAENSEE-- 332
+IS ERELLEEL S+ D +S+RS++R + Q + S +P E+ V E +EE
Sbjct: 428 QISAGERELLEELASLKDTSSNRSRTRAKPQQPSTLSTAPSGS--ENKKDEVKEENEEPE 485
Query: 331 -QNDIWNQLKDLAG 293
+N +WN +K+ AG
Sbjct: 486 QENYLWNNIKEFAG 499
>gb|AAF73774.1|AF154007_1 surface protein PspC [Streptococcus pneumoniae]
Length = 536
Score = 35.8 bits (81), Expect = 0.28
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 463 SIVDKTSSRSKSRPRTQSSTGSSESPVAQKPESPSPTVAENSE 335
S +D+ S+ K P + SS+GSS P +PE+P P V E
Sbjct: 133 SKLDEAVSKYKKAPSSSSSSGSSTKPETPQPETPKPEVKPEPE 175
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,938,237
Number of Sequences: 1393205
Number of extensions: 8223374
Number of successful extensions: 27530
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 25662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27437
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
