Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016648A_C01 KMC016648A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200448.1| F-box protein; protein id: At5g56370.1 [Arabido... 40 0.016
dbj|BAB11268.1| emb|CAB62440.1~gene_id:MCD7.16~similar to unknow... 39 0.027
ref|NP_191482.1| putative protein; protein id: At3g59230.1 [Arab... 39 0.036
pir||T49022 hypothetical protein F3C22.90 - Arabidopsis thaliana... 37 0.18
ref|NP_191475.1| putative protein; protein id: At3g59160.1 [Arab... 37 0.18
>ref|NP_200448.1| F-box protein; protein id: At5g56370.1 [Arabidopsis thaliana]
gi|10177836|dbj|BAB11265.1|
emb|CAB62440.1~gene_id:MCD7.13~similar to unknown
protein [Arabidopsis thaliana]
Length = 421
Score = 40.0 bits (92), Expect = 0.016
Identities = 23/69 (33%), Positives = 38/69 (54%), Gaps = 2/69 (2%)
Frame = -1
Query: 407 FHNLTHIELEYNCRISDWLTVVELLKHCPKLQVLVINQS--CLPDDFGEVVEDWEYPPSV 234
FH L H+E C ++W ++ +LKH PKL+ L +N++ + + WE P SV
Sbjct: 282 FHQLEHLEFCSCC--TEWDILMFMLKHSPKLRSLKLNETHGYTIVSQSDPMFHWEEPSSV 339
Query: 233 PESIQLCLK 207
PE++ L+
Sbjct: 340 PETLMFVLE 348
>dbj|BAB11268.1| emb|CAB62440.1~gene_id:MCD7.16~similar to unknown protein
[Arabidopsis thaliana]
Length = 450
Score = 39.3 bits (90), Expect = 0.027
Identities = 27/68 (39%), Positives = 33/68 (47%), Gaps = 1/68 (1%)
Frame = -1
Query: 407 FHNLTHIELEYNCRISDWLTVVE-LLKHCPKLQVLVINQSCLPDDFGEVVEDWEYPPSVP 231
F L H+EL C S WL ++ LL PKL+VL +N P E W P SVP
Sbjct: 319 FSQLDHLEL-CTCDDSKWLNILAMLLPDSPKLRVLKLNDKYHPLRAKEPRPRWNEPSSVP 377
Query: 230 ESIQLCLK 207
E I L+
Sbjct: 378 ECILYSLE 385
>ref|NP_191482.1| putative protein; protein id: At3g59230.1 [Arabidopsis thaliana]
gi|11357654|pir||T48991 hypothetical protein F25L23.90 -
Arabidopsis thaliana gi|7801673|emb|CAB91593.1| putative
protein [Arabidopsis thaliana]
Length = 491
Score = 38.9 bits (89), Expect = 0.036
Identities = 28/84 (33%), Positives = 43/84 (50%), Gaps = 3/84 (3%)
Frame = -1
Query: 413 PKFHNLTHIELEYNCRISDWLTVVELLKHCPKLQVLVINQSCL---PDDFGEVVEDWEYP 243
P F+NLT + +E N ++ W ++ LLK+CP L+ LV Q L D G++ P
Sbjct: 339 PIFNNLTRLTIESNTKVG-WDSLPNLLKNCPNLKTLVF-QGLLHKATDRCGDMC-----P 391
Query: 242 PSVPESIQLCLKCTSKEKNLVLNF 171
PE+I CL + + +L F
Sbjct: 392 CKPPENIHTCLSSSPVKVLEILKF 415
>pir||T49022 hypothetical protein F3C22.90 - Arabidopsis thaliana (fragment)
gi|7669943|emb|CAB89230.1| putative protein [Arabidopsis
thaliana]
Length = 427
Score = 36.6 bits (83), Expect = 0.18
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -1
Query: 407 FHNLTHIELEYNCRISDWLTVVELLKHCPKLQVL-VINQSCLPDDFGEVVEDWEYPPSVP 231
F+ L H+E+ Y C+ W + +L PKLQVL +I ++ G V W P +VP
Sbjct: 289 FYQLVHLEI-YTCKEEWWNLLKLMLDSSPKLQVLKLIGKNLDFKKVGMVGGKWNEPKNVP 347
Query: 230 ESIQLCLK 207
E + LK
Sbjct: 348 ECLLSQLK 355
>ref|NP_191475.1| putative protein; protein id: At3g59160.1 [Arabidopsis thaliana]
gi|11357644|pir||T48984 hypothetical protein F25L23.20 -
Arabidopsis thaliana gi|7801666|emb|CAB91586.1| putative
protein [Arabidopsis thaliana]
Length = 464
Score = 36.6 bits (83), Expect = 0.18
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = -1
Query: 413 PKFHNLTHIELEYNCRISDWLTVVELLKHCPKLQVLV 303
P F+NLTH+ ++ ++ W ++++LLK+ PKLQ LV
Sbjct: 355 PIFNNLTHVTIQSTPKVG-WKSLLKLLKNSPKLQTLV 390
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,992,018
Number of Sequences: 1393205
Number of extensions: 8416009
Number of successful extensions: 21504
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 21037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21492
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
